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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010921398.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 292aa MW: 32739.6 Da PI: 5.4034 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.6 | 6.8e-19 | 31 | 78 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl XP_010921398.1 31 RGPWTAEEDLILMNYIAAHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 78 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.3 | 6.2e-17 | 84 | 127 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ XP_010921398.1 84 RGNITPEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 127 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.098 | 26 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.11E-32 | 28 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-15 | 30 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-17 | 31 | 78 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-24 | 32 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.39E-11 | 33 | 78 | No hit | No description |
SMART | SM00717 | 3.6E-15 | 83 | 131 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.381 | 83 | 133 | IPR017930 | Myb domain |
Pfam | PF00249 | 7.9E-16 | 84 | 127 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-23 | 86 | 132 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.52E-11 | 88 | 127 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MEMGVGIGGE VHGRTCSSAT PPSEEDMDLR RGPWTAEEDL ILMNYIAAHG EGRWNSLARC 60 AGLKRTGKSC RLRWLNYLRP DVRRGNITPE EQLLILELHS RWGNRWSKIA QYLPGRTDNE 120 IKNYWRTRVQ KHAKQLRCDV NSKQFKDIMR YQWMPRLMER IWAASGSSAG TVYPNVGVPM 180 AGAHQPVEPG SESGQVKPSP ETSSAAGSSS DSVGMQFSSP PPLPADCFTD WYGGMQEGEN 240 EGGDWIHDVQ MGGWWPESLP SPGGYSNVGL PDFDQNAWSD NLWSVEDIWL QQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-25 | 28 | 131 | 24 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010921398.3 | 0.0 | LOW QUALITY PROTEIN: transcription factor JAMYB | ||||
TrEMBL | A0A2H3XBB2 | 0.0 | A0A2H3XBB2_PHODC; transcription factor MYB2 | ||||
STRING | XP_008781174.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 2e-84 | myb domain protein 78 |