PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010921148.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Protein Properties

Length: 888aa MW: 97870.3 Da PI: 7.5184

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010921148.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.2	7.2e-19	331	430	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ lt++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_010921148.1 331 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLTIQDAKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRID-PEGK 423 99************************555566778***********99899999999.*******************987.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ XP_010921148.1 424 LVMGFRK 430 7777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	8.8E-31	323	436	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.03E-20	328	431	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.50E-23	329	430	No hit	No description
PROSITE profile	PS50863	11.42	331	432	IPR003340	B3 DNA binding domain
SMART	SM01019	9.4E-22	331	431	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.8E-16	331	430	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	14.569	568	618	IPR011124	Zinc finger, CW-type
Pfam	PF07496	1.9E-13	573	615	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 888 aa Download sequence Send to blast
MATKRCMNVS CGATVPEGEW KKGWGLKSGG FANLCNKCGV AYEQLIFCDI FHQKQSGWRE 60 CFFCGKRLHC GCIASKFSFD LLDNGGVQCI SCMKNSEISF VSSEAMQNFL PQHNQRLLVG 120 SECDLSTSSA ETKMDDSAVG KGKGIMQLVR NNDTNKQRIV SLEQREGENG SSQPIRWDHL 180 AYNTGEVGKL SFSSRNQGAI MSSQMSQQHD MISESLAQAC LSMTLGTSDA ERPLMVLPPT 240 NALAEGGDQN KASSTFQQVQ RARQFLPRLP KAGSGATPEV SKDGASHMRV ARPPAEGRGR 300 NQLLPRYWPR ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI 360 SQPEGLPLTI QDAKGKEWHF QFRFWPNNNS RMYVLEGVTP CIQSLQLQAG DTVTFSRIDP 420 EGKLVMGFRK ATNTVPLQDS QISAIANSAV GNETFLPGVN ENLPIATGYP GLLLSYHQTD 480 KHGGRPNDGL QLQPVQKRSR NIGTKSRRLL MDSEDALELT LTWGEAQDLL RPAPNSRPSI 540 VMIDDHEIEE YDEPPVLGKK TIYTARLTGE RDQWIQCDAC SKWRRLPVDV LVLSKWTCAD 600 NTWDPKRSSC HAPEELSQKD LQSLLRQYAD YRRQRMNAKQ HCAELDASSG LDALANAAAL 660 GDVSNQTTSS VATTTKHPRH RPGCTCIVCI QPPSGKGPKH SPTCTCNVCL TVKRRFKTLM 720 MRKKKRQSER EEAEAQKRLA WGNKEELEGD SLSRRSVQPL DVHRECELGQ GPGYGRTIVE 780 KVDMSKGQID LNCHPGRDEV PQAGPPRQSM MSLLQEANLP LEMYLKQNGL TSLVGEQGSS 840 SSHTIPQGPG ESDGRTPDES HFASVAQERD GGADEAHDSP DKARSDTA

Sequence ? help Back to Top

Protein Sequence Length: 888 aa Download sequence Send to blast

MATKRCMNVS CGATVPEGEW KKGWGLKSGG FANLCNKCGV AYEQLIFCDI FHQKQSGWRE  60
CFFCGKRLHC GCIASKFSFD LLDNGGVQCI SCMKNSEISF VSSEAMQNFL PQHNQRLLVG  120
SECDLSTSSA ETKMDDSAVG KGKGIMQLVR NNDTNKQRIV SLEQREGENG SSQPIRWDHL  180
AYNTGEVGKL SFSSRNQGAI MSSQMSQQHD MISESLAQAC LSMTLGTSDA ERPLMVLPPT  240
NALAEGGDQN KASSTFQQVQ RARQFLPRLP KAGSGATPEV SKDGASHMRV ARPPAEGRGR  300
NQLLPRYWPR ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI  360
SQPEGLPLTI QDAKGKEWHF QFRFWPNNNS RMYVLEGVTP CIQSLQLQAG DTVTFSRIDP  420
EGKLVMGFRK ATNTVPLQDS QISAIANSAV GNETFLPGVN ENLPIATGYP GLLLSYHQTD  480
KHGGRPNDGL QLQPVQKRSR NIGTKSRRLL MDSEDALELT LTWGEAQDLL RPAPNSRPSI  540
VMIDDHEIEE YDEPPVLGKK TIYTARLTGE RDQWIQCDAC SKWRRLPVDV LVLSKWTCAD  600
NTWDPKRSSC HAPEELSQKD LQSLLRQYAD YRRQRMNAKQ HCAELDASSG LDALANAAAL  660
GDVSNQTTSS VATTTKHPRH RPGCTCIVCI QPPSGKGPKH SPTCTCNVCL TVKRRFKTLM  720
MRKKKRQSER EEAEAQKRLA WGNKEELEGD SLSRRSVQPL DVHRECELGQ GPGYGRTIVE  780
KVDMSKGQID LNCHPGRDEV PQAGPPRQSM MSLLQEANLP LEMYLKQNGL TSLVGEQGSS  840
SSHTIPQGPG ESDGRTPDES HFASVAQERD GGADEAHDSP DKARSDTA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	2e-67	309	438	2	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	712	723	KRRFKTLMMRKK
2	712	725	KRRFKTLMMRKKKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010921148.1	0.0	B3 domain-containing protein Os07g0679700 isoform X2
Swissprot	Q6Z3U3	0.0	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A2H3XEY5	0.0	A0A2H3XEY5_PHODC; B3 domain-containing protein Os07g0679700-like isoform X1
STRING	XP_008782658.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]