PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010921146.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 889aa    MW: 97998.5 Da    PI: 7.5184
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010921146.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.27.2e-19331430198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kvl+ sd+++ grlvlpk +ae++   ++++e+  lt++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++
  XP_010921146.1 331 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLTIQDAKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRID-PEGK 423
                     99**************************555566778***************9989999999***9.********************987.7777 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     lv+++++
  XP_010921146.1 424 LVMGFRK 430
                     7777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-30323433IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.03E-20328431IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-23329430No hitNo description
PROSITE profilePS5086311.42331432IPR003340B3 DNA binding domain
SMARTSM010199.4E-22331431IPR003340B3 DNA binding domain
PfamPF023623.8E-16331430IPR003340B3 DNA binding domain
PROSITE profilePS5105014.569569619IPR011124Zinc finger, CW-type
PfamPF074961.9E-13574616IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 889 aa     Download sequence    Send to blast
MATKRCMNVS CGATVPEGEW KKGWGLKSGG FANLCNKCGV AYEQLIFCDI FHQKQSGWRE  60
CFFCGKRLHC GCIASKFSFD LLDNGGVQCI SCMKNSEISF VSSEAMQNFL PQHNQRLLVG  120
SECDLSTSSA ETKMDDSAVG KGKGIMQLVR NNDTNKQRIV SLEQREGENG SSQPIRWDHL  180
AYNTGEVGKL SFSSRNQGAI MSSQMSQQHD MISESLAQAC LSMTLGTSDA ERPLMVLPPT  240
NALAEGGDQN KASSTFQQVQ RARQFLPRLP KAGSGATPEV SKDGASHMRV ARPPAEGRGR  300
NQLLPRYWPR ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI  360
SQPEGLPLTI QDAKGKEWHF QFRFWPNNNS RMYVLEGVTP CIQSLQLQAG DTVTFSRIDP  420
EGKLVMGFRK ATNTVPLQQD SQISAIANSA VGNETFLPGV NENLPIATGY PGLLLSYHQT  480
DKHGGRPNDG LQLQPVQKRS RNIGTKSRRL LMDSEDALEL TLTWGEAQDL LRPAPNSRPS  540
IVMIDDHEIE EYDEPPVLGK KTIYTARLTG ERDQWIQCDA CSKWRRLPVD VLVLSKWTCA  600
DNTWDPKRSS CHAPEELSQK DLQSLLRQYA DYRRQRMNAK QHCAELDASS GLDALANAAA  660
LGDVSNQTTS SVATTTKHPR HRPGCTCIVC IQPPSGKGPK HSPTCTCNVC LTVKRRFKTL  720
MMRKKKRQSE REEAEAQKRL AWGNKEELEG DSLSRRSVQP LDVHRECELG QGPGYGRTIV  780
EKVDMSKGQI DLNCHPGRDE VPQAGPPRQS MMSLLQEANL PLEMYLKQNG LTSLVGEQGS  840
SSSHTIPQGP GESDGRTPDE SHFASVAQER DGGADEAHDS PDKARSDTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-673094382131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1713724KRRFKTLMMRKK
2713726KRRFKTLMMRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921147.10.0B3 domain-containing protein Os07g0679700 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2H3XEY50.0A0A2H3XEY5_PHODC; B3 domain-containing protein Os07g0679700-like isoform X1
STRINGXP_008782658.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65193748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]