PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010921056.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WRKY
Protein Properties Length: 594aa    MW: 64889.8 Da    PI: 7.4939
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010921056.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.54.8e-32254311260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgse+prsYY+Ct+++C++kkkver+  +++++ei+Y+g+Hnh+k
  XP_010921056.1 254 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCSTKKKVERNL-EGQITEIVYKGSHNHPK 311
                     8****************************************.***************85 PP
2WRKY104.84.7e-33421479159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d ++v++tYeg+Hnh+
  XP_010921056.1 421 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTVGCPVRKHVERASHDLRAVITTYEGKHNHD 479
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-28240312IPR003657WRKY domain
SuperFamilySSF1182909.29E-25247312IPR003657WRKY domain
PROSITE profilePS5081123.124248312IPR003657WRKY domain
SMARTSM007746.2E-34253311IPR003657WRKY domain
PfamPF031061.5E-24254310IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.6E-37406481IPR003657WRKY domain
SuperFamilySSF1182904.45E-29413481IPR003657WRKY domain
PROSITE profilePS5081138.411416481IPR003657WRKY domain
SMARTSM007742.1E-38421480IPR003657WRKY domain
PfamPF031062.8E-25422479IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MASSTGSLDT SANSHPASFS FSSPFATSFS ELLARGGDDN ADDRSRVPAS RGLLDRAGSG  60
GGGIPKFKSI PPPSLPISPP PISPSSYFAI PAGLSPAELL DSPVLLSSSN ILPSPTTGTF  120
PSQAFNWKTI SAHPQQGIKD ENRAYSDFSF QPHTKPMNSQ FTSFLSSSAA VSTDEAFKGH  180
QQLWSHHETS NNNSELSSQK NNIKAENMAP IRTSSSEIPT LQANSQGNNN GGYQSDYNNS  240
NQAAQTLREQ RRSDDGYNWR KYGQKQVKGS ENPRSYYKCT YPNCSTKKKV ERNLEGQITE  300
IVYKGSHNHP KPQSTRRNSA SSQAIQGSVP SESYDHSFGG QAGTPIDSVA TPDNSSVSFG  360
DDDNNMSSQR SNSRGDDFDE DEPDAKRWKK EGENEGISAS GNKTVREPRV VVQTTSDIDI  420
LDDGYRWRKY GQKVVKGNPN PRSYYKCTTV GCPVRKHVER ASHDLRAVIT TYEGKHNHDV  480
PAARGSGGHA VSRPSTDNNN NYNISMAIRP SAIPNHANHI TANSLLGGRL NASESQSPLT  540
LEMLQSAGSY GYSGYENSIN SFVNQQQQQR HMEIMFPKTK EEPREDVFLE SLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-37243482778Probable WRKY transcription factor 4
2lex_A9e-37243482778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921056.10.0WRKY transcription factor WRKY24
SwissprotQ6B6R41e-154WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2H3YUQ30.0A0A2H3YUQ3_PHODC; WRKY transcription factor WRKY24-like
STRINGXP_008804160.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-119WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]