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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010920948.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | AP2 | ||||||||
Protein Properties | Length: 475aa MW: 52479.4 Da PI: 7.1804 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.9 | 8.8e-17 | 163 | 212 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_010920948.1 163 SRYRGVTFYRRTGRWESHIWD------CgKQIYLGGFDTAHAAARAYDRAAIKFRG 212 79*******************......55************************997 PP | |||||||
2 | AP2 | 40.3 | 7.7e-13 | 255 | 305 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f ++ eAa+a+++a+ k +g XP_010920948.1 255 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFNSEIEAARAYDKAAIKCNG 305 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.9E-9 | 163 | 212 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.84E-16 | 163 | 221 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.3E-17 | 164 | 221 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-32 | 164 | 226 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.886 | 164 | 220 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.55E-24 | 255 | 315 | No hit | No description |
SuperFamily | SSF54171 | 1.44E-16 | 255 | 314 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.3E-8 | 255 | 305 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-15 | 256 | 313 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-31 | 256 | 319 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.461 | 256 | 313 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-6 | 257 | 268 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-6 | 295 | 315 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MMMLDLNLAS SGESLAFQEK PLPDEDSGTS KSSVLNAEAS SNTPDEDSCS TRPAAGFRFG 60 ILKSSASAEG ENVVKEEIEE DGNDASLESS FITRQLFPLA SAAVPERLQP PLVAASSSSS 120 SRQQWADLNF RQSIPADVRV VQQQQQQQPQ VKKSRRGPRS RSSRYRGVTF YRRTGRWESH 180 IWDCGKQIYL GGFDTAHAAA RAYDRAAIKF RGVDADINFN LSDYEEELKQ MKNLSKEEFV 240 HILRRHSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFNSEI EAARAYDKAA 300 IKCNGRDAVT NFEPSTYEGE LLTEAADSQA TGHDVDLNLR ISQPVACSPM RDQDSMGIQF 360 HFGSRSDAKK ATIDIPSSHL AGEPHHLLTA QYPIIFPTIE ERAREKRTEV GSQSLSNWAW 420 QVDGPTLLPL FSSAASSGFS TSSVAAAHPS SLPPPSSTLH SHFNPPAPFN FLFRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010920948.1 | 0.0 | APETALA2-like protein 1 isoform X1 | ||||
Swissprot | B8AXC3 | 1e-131 | AP21_ORYSI; APETALA2-like protein 1 | ||||
TrEMBL | A0A2H3ZP21 | 0.0 | A0A2H3ZP21_PHODC; AP2-like ethylene-responsive transcription factor TOE3 isoform X1 | ||||
STRING | XP_008789029.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10083 | 29 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-108 | related to AP2.7 |