PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C3H

Protein Properties

Length: 671aa MW: 70648.5 Da PI: 7.8074

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010920847.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.9	7e-08	264	284	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg XP_010920847.1 264 PCPEFRK-GSCRNGDACEYAHG 284 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	6.68E-12	78	163	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.6E-13	82	173	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	17.847	82	188	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	4.6E-8	82	151	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	17	82	112	IPR002110	Ankyrin repeat
CDD	cd00204	8.08E-6	84	184	No hit	No description
PROSITE profile	PS50088	12.529	117	152	IPR002110	Ankyrin repeat
SMART	SM00248	0.0019	117	149	IPR002110	Ankyrin repeat
Gene3D	G3DSA:4.10.1000.10	6.5E-5	256	285	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.4E-4	259	285	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.141	259	286	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.1E-5	264	284	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	21	294	317	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.972	294	318	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence Send to blast
MCSGLRKPSP PPSPPTGPAV MAAGGDSEKL SVAALPASLL LELSASDDFP AFKRAVEDDG 60 LPLDCPAPWY CRSLNRRTMG FEQRTPLMIA ALYGSPTVLA YILAASPAEA SRRSPSDGAT 120 PLHCAASGGS PFSLGIVKML MDAAADVDAT DAAGNRPGDV IARHFSASIT RSLEVVLKAG 180 SGISSLGGAK EEETKSGEKK YPLDITLPDI NNGIYGTDEF RMYTFKVKPC SRAYSHDWTE 240 CPFVHPGENA RRRDPRKYFY SCVPCPEFRK GSCRNGDACE YAHGVFESWL HPDQYRTRLC 300 KDETGCNRRV CFFAHKPEEL RSVNPSAASV AGMVLSSPKS SSGLSSLDMA TALMMMQQTG 360 SGMSPSASSG LGAATAWMNQ PGSLATPPSL QLPSSRLKAS LGAFDLDLLG LEGYQQKLID 420 EFSSTASPRA NWTPNSLAAA SRASDINELF GSLNPSVLSQ LQGLSLKKTA AASSSAGAQF 480 QSPTGVRSQL LSGYGGNLPP SPTVSGTSSF GLDHSMAKAI MSSRASAFAK RSQSFIDRGA 540 MAGRQSTLSS MTTAAAGTSS VLSDWGSPDG KLDWGIQGDE LNKLRKAASF NFRTNQAGSG 600 FGGAAPAAAA VPGRLDEPDL SWVQSLVKDG PAAPMGRRGL EQQQKGYQLN GAGGDFHGSE 660 LLSSWEEKIM A

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence Send to blast

MCSGLRKPSP PPSPPTGPAV MAAGGDSEKL SVAALPASLL LELSASDDFP AFKRAVEDDG  60
LPLDCPAPWY CRSLNRRTMG FEQRTPLMIA ALYGSPTVLA YILAASPAEA SRRSPSDGAT  120
PLHCAASGGS PFSLGIVKML MDAAADVDAT DAAGNRPGDV IARHFSASIT RSLEVVLKAG  180
SGISSLGGAK EEETKSGEKK YPLDITLPDI NNGIYGTDEF RMYTFKVKPC SRAYSHDWTE  240
CPFVHPGENA RRRDPRKYFY SCVPCPEFRK GSCRNGDACE YAHGVFESWL HPDQYRTRLC  300
KDETGCNRRV CFFAHKPEEL RSVNPSAASV AGMVLSSPKS SSGLSSLDMA TALMMMQQTG  360
SGMSPSASSG LGAATAWMNQ PGSLATPPSL QLPSSRLKAS LGAFDLDLLG LEGYQQKLID  420
EFSSTASPRA NWTPNSLAAA SRASDINELF GSLNPSVLSQ LQGLSLKKTA AASSSAGAQF  480
QSPTGVRSQL LSGYGGNLPP SPTVSGTSSF GLDHSMAKAI MSSRASAFAK RSQSFIDRGA  540
MAGRQSTLSS MTTAAAGTSS VLSDWGSPDG KLDWGIQGDE LNKLRKAASF NFRTNQAGSG  600
FGGAAPAAAA VPGRLDEPDL SWVQSLVKDG PAAPMGRRGL EQQQKGYQLN GAGGDFHGSE  660
LLSSWEEKIM A

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00566	DAP	Transfer from AT5G58620	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010920847.1	0.0	zinc finger CCCH domain-containing protein 33
Swissprot	Q688R3	1e-176	C3H33_ORYSJ; Zinc finger CCCH domain-containing protein 33
TrEMBL	A0A2H3Y459	0.0	A0A2H3Y459_PHODC; zinc finger CCCH domain-containing protein 33
STRING	XP_008793149.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6013	21	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-147	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]