 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_010920800.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
| Family | bHLH | ||||||||
| Protein Properties | Length: 247aa MW: 27133.9 Da PI: 9.5349 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 37.8 | 3.4e-12 | 65 | 109 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
h+e+E+rRR+riN +++Lr+++P a K++Ka+ L ++++ +k+L
XP_010920800.1 65 HSEAEKRRRERINAHLSTLRRMIPDA-----DKMDKASLLGRVIDQVKDL 109
9************************9.....8*************99988 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 3.27E-13 | 57 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 15.231 | 60 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 9.2E-10 | 65 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 2.08E-12 | 65 | 112 | No hit | No description |
| Gene3D | G3DSA:4.10.280.10 | 1.4E-12 | 65 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 4.9E-12 | 66 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:3.30.70.260 | 1.8E-6 | 151 | 209 | No hit | No description |
| CDD | cd04873 | 4.00E-11 | 152 | 219 | No hit | No description |
| SuperFamily | SSF55021 | 6.87E-6 | 152 | 211 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 247 aa Download sequence Send to blast |
MAQCFPPYGW SQEGKKRSSF PKGSLLLPRP SNSAPPSLDF GASCPFSSSS VSGRSATAAR 60 ALKIHSEAEK RRRERINAHL STLRRMIPDA DKMDKASLLG RVIDQVKDLK RKASDIGNCF 120 QVPAEVNEVT VECNQGNGHP GADHGSLYIK ATICCNDRPD LFTDLTQAFH DLRLRTIRAD 180 ITSLGGRVQN VFMLYGKEGN VSVCLSSLKE SIEEALSRVV SPDMAPTNVV PSKKQKLLES 240 HYSRVTF |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010920800.1 | 0.0 | transcription factor bHLH51 | ||||
| TrEMBL | A0A2H3Y3J8 | 1e-128 | A0A2H3Y3J8_PHODC; transcription factor bHLH51-like | ||||
| STRING | XP_008792668.1 | 1e-129 | (Phoenix dactylifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP3347 | 36 | 78 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G40200.1 | 3e-37 | bHLH family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|