PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010920705.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 318aa    MW: 35097.1 Da    PI: 6.8756
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010920705.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.00042152531255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  XP_010920705.1 215 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 253
                     6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.655203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-10213264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.58E-6213257No hitNo description
Gene3DG3DSA:4.10.280.101.8E-7217260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MNRGVFESSL VQQMMGGSPT WWNMNNLRPP AQQTSFLLPS SSTSSSSSSS SSVFPQDSQP  60
SNFLPMISWH DNQYLPESWS QLLLGGLMEE EGRCSFTPFR AKSSVDNWED QVLYPSASTQ  120
MVDVKQETSE GGYLYSHGNE EIQAPRSPWS QVLPTSSPRS CITNFSRNML DFSSTKAEKK  180
HLHPDHSSEC NSTTGAAFKK ARVQASSAQS PFKVRKEKLG DRITALHQLV SPFGKTDTAS  240
VLLEAIGYIR FLQSQIEALS SPYLGSGTRN MRQSDADDEP KKDLRSRGLC LVPVSFTLHV  300
GGDNGADYWA PTFGGGFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010920705.10.0transcription factor bHLH68
SwissprotQ8S3D12e-65BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A2H3XG121e-163A0A2H3XG12_PHODC; transcription factor bHLH68-like
STRINGXP_008783244.11e-163(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2167817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.19e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]