PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010920259.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C2H2

Protein Properties

Length: 441aa MW: 46789.1 Da PI: 9.7829

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010920259.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.3e-05	173	195	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 Cp Cg++F+ +++L+ H+ H XP_010920259.1 173 ACPACGEVFTKSESLELHQTIrH 195 6******************8877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.349	172	200	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	172	195	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	4.89E-19	197	244	No hit	No description
Gene3D	G3DSA:3.90.228.10	4.0E-11	199	438	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain
SuperFamily	SSF56399	4.89E-19	275	439	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MALTSFLPSA TPKSHHHDHH KRKKKPSQLP PPRPPPPPQP TKRPAPPSSW EQFKSLLSCR 60 ISAPSQVHEP SKLGGRSSSC GSSICAFRDV VHGNTRVVHR SDTDHYSSAS DSGPLDTAPL 120 ARRRHPPPPP VVTSGSHSKG GMQLRKLSGC YECHAISAEP ASRRYPRSRM LCACPACGEV 180 FTKSESLELH QTIRHAVSEL GAEDSGRNIV EIIFKSSWQK KDHPICKVER ILKVHNTQRT 240 IARFEDYRNA VKARALLHLH AAGGLRQPST NKKNPRCAAD GNELLRFHCT TLACSLGARG 300 STALCSSAAA AVGATAPCGV CAIIRHGFGR AHHPHGVCTT ASSGRAHDCG SPSSGVAGGG 360 VVGGLRAMLV CRVIAGRVRR PGDADPAAED AYDSVAGAGA RAGAGDPGLG DGGAYTNLEE 420 LFVANPRAIL PCFVVIYRSL E

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MALTSFLPSA TPKSHHHDHH KRKKKPSQLP PPRPPPPPQP TKRPAPPSSW EQFKSLLSCR  60
ISAPSQVHEP SKLGGRSSSC GSSICAFRDV VHGNTRVVHR SDTDHYSSAS DSGPLDTAPL  120
ARRRHPPPPP VVTSGSHSKG GMQLRKLSGC YECHAISAEP ASRRYPRSRM LCACPACGEV  180
FTKSESLELH QTIRHAVSEL GAEDSGRNIV EIIFKSSWQK KDHPICKVER ILKVHNTQRT  240
IARFEDYRNA VKARALLHLH AAGGLRQPST NKKNPRCAAD GNELLRFHCT TLACSLGARG  300
STALCSSAAA AVGATAPCGV CAIIRHGFGR AHHPHGVCTT ASSGRAHDCG SPSSGVAGGG  360
VVGGLRAMLV CRVIAGRVRR PGDADPAAED AYDSVAGAGA RAGAGDPGLG DGGAYTNLEE  420
LFVANPRAIL PCFVVIYRSL E

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010920259.1	0.0	uncharacterized protein LOC105044151
TrEMBL	A0A2H3Z2P2	1e-180	A0A2H3Z2P2_PHODC; LOW QUALITY PROTEIN: uncharacterized protein LOC103719889
STRING	XP_008807585.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12431	27	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	4e-97	C2H2-like zinc finger protein