PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010920215.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 352aa MW: 38926 Da PI: 6.2471

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010920215.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.7e-09	56	105	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL l ++ +K++Ka+iL +++ +k+L XP_010920215.1 56 RKVQKADREKLRRDRLNEQFLELGNALDPD----RPKNDKATILADTIQMLKDL 105 5677889******************997....79**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	3.1E-12	55	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.913	55	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-7	56	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-13	56	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.97E-7	56	109	No hit	No description
SMART	SM00353	1.2E-6	61	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MDQWKPSEGF FPDPAQAELQ DNGFHRASDD LCQHPARLPD PSQRVDQDVK DSIAARKVQK 60 ADREKLRRDR LNEQFLELGN ALDPDRPKND KATILADTIQ MLKDLTAQVN RLKAEYTSLS 120 EESHELTQEK NELREEKAAL KSEIDNLNAR YQQRLRVLYP WAAMDTSVIM GPPPAYPFPM 180 PVPIPSGPIP IHPSLQPYPF FRNQNPGTIP NSCSTYGPYA HPCNVQVEQP TTQCIPPHPH 240 PSGNKSHSGS RQDSRSKSSD RQQRSCGERS DDISDVATEL ELKTPGSAVP SSHSKEANDQ 300 DLSSEVRKGK QWPSERKGSG CSDGSSSSRC SSCGVVPDSS SNSVADSSVS KN

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MDQWKPSEGF FPDPAQAELQ DNGFHRASDD LCQHPARLPD PSQRVDQDVK DSIAARKVQK  60
ADREKLRRDR LNEQFLELGN ALDPDRPKND KATILADTIQ MLKDLTAQVN RLKAEYTSLS  120
EESHELTQEK NELREEKAAL KSEIDNLNAR YQQRLRVLYP WAAMDTSVIM GPPPAYPFPM  180
PVPIPSGPIP IHPSLQPYPF FRNQNPGTIP NSCSTYGPYA HPCNVQVEQP TTQCIPPHPH  240
PSGNKSHSGS RQDSRSKSSD RQQRSCGERS DDISDVATEL ELKTPGSAVP SSHSKEANDQ  300
DLSSEVRKGK QWPSERKGSG CSDGSSSSRC SSCGVVPDSS SNSVADSSVS KN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010920215.1	0.0	transcription factor bHLH121
Swissprot	Q9LT23	2e-78	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A2H3XSZ7	0.0	A0A2H3XSZ7_PHODC; transcription factor bHLH121
STRING	XP_008788362.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11767	25	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	5e-70	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]