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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_010920198.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
| Family |
RAV |
| Protein Properties |
Length: 355aa MW: 39587.6 Da PI: 6.7931 |
| Description |
RAV family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_010920198.1 | genome | OG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 26.1 | 2.2e-08 | 62 | 108 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
+ykGV +g W A+I+ + r++lg+f ++ Aa a++ a+ kl+
XP_010920198.1 62 RYKGVVLQQ-NGHWGAQIYAH-----HHRIWLGTFKSELAAAVAYDSAAIKLH 108
599**9877.8*********4.....5**********99************98 PP
|
| 2 | B3 | 84.3 | 1.1e-26 | 190 | 281 | 1 | 89 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
f k+ltpsdv+k++rlv+pkk+a++ +++ + l ++d+++r W ++++y+k+s++yv+tkGW++Fvk+++L+++D+v F++ + ++
XP_010920198.1 190 FTKELTPSDVGKLNRLVIPKKHATRSfpkvtpESN--DELLLEFRDPESRLWVFRYCYWKSSQSYVFTKGWNKFVKEKRLQAKDSVAFYHCE-ER 281
89*********************999998865434..4557999*********************************************865.33 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 355 aa
Download sequence Send
to blast |
MFQSKDDDVS MVDASSVAEV GNMAGGMLSM ATTAAAAREG EGSTSTGGGD PSIMQRPSSS 60
MRYKGVVLQQ NGHWGAQIYA HHHRIWLGTF KSELAAAVAY DSAAIKLHRG DSHRNLPRNE 120
ITIHEARFQE QFSTDSILEM IKNGSYESRF AEYLQVIQSS LAAPSRVSSR SGFGGGGGGG 180
DGGTICCEMF TKELTPSDVG KLNRLVIPKK HATRSFPKVT PESNDELLLE FRDPESRLWV 240
FRYCYWKSSQ SYVFTKGWNK FVKEKRLQAK DSVAFYHCEE RKSPWRAYCM IKAVPFQQEQ 300
GQENGNVMIG LGLSYKREMD EEEEEEVISE PMALSGVTEG EQEKKRVKIF GVWVS
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5os9_A | 4e-30 | 189 | 278 | 7 | 96 | B3 domain-containing transcription factor NGA1 |
| 5os9_B | 4e-30 | 189 | 278 | 7 | 96 | B3 domain-containing transcription factor NGA1 |
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