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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_010920036.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 278aa MW: 30690.1 Da PI: 10.5223 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_010920036.1 | genome | OG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 251.6 | 5.1e-77 | 52 | 278 | 75 | 301 |
GAGA_bind 75 verdnkllalllvenslasalpvgvqvlsgtksidslqq..lsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkk 167
++rd+ + + ++ ++ ++ + ls+tk+++s++ ++ + ++ + +++ e +++ +e ++ +++++++ k+++++ +k+ ++k++
XP_010920036.1 52 INRDSIIGECNSGVSAMDFSWIPQRSFLSQTKNMNSTHAtpVNSEMMDVQGMPVAAEGAMQNGVLEAKPLRVRKQHRSTKKNNHTAAKVLRQKEP 146
555555555555555555666667788899999998888433334455555667777777777777777778888888888999999******** PP
GAGA_bind 168 kkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSq 262
kk+++++ k++ +++ + k+ekk++d+ ++g +D s++PvPvCsCtG+++qCY+WG+GGWqS+CCt++iS yPLP+s+ r+gaR+agrKmS
XP_010920036.1 147 KKQPSVPAKRKGSST--SMGKREKKTQDIIVDGTMVDFSNVPVPVCSCTGVPHQCYRWGAGGWQSSCCTMSISEYPLPMSPSRPGARLAGRKMSI 239
**9999988777776..679*************************************************************************** PP
GAGA_bind 263 gafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
ga++klL +LaaeG+dls +vDLkdhWA+HGtnkfv i+
XP_010920036.1 240 GAYRKLLHRLAAEGHDLSYAVDLKDHWARHGTNKFVIIK 278
************************************998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 278 aa
Download sequence Send
to blast |
MDRRGRLGTR NWEFSNHTGH AESVLKPVSC LSVPNSTVSG HQETSPKMSS YINRDSIIGE 60
CNSGVSAMDF SWIPQRSFLS QTKNMNSTHA TPVNSEMMDV QGMPVAAEGA MQNGVLEAKP 120
LRVRKQHRST KKNNHTAAKV LRQKEPKKQP SVPAKRKGSS TSMGKREKKT QDIIVDGTMV 180
DFSNVPVPVC SCTGVPHQCY RWGAGGWQSS CCTMSISEYP LPMSPSRPGA RLAGRKMSIG 240
AYRKLLHRLA AEGHDLSYAV DLKDHWARHG TNKFVIIK
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
