PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919958.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 691aa    MW: 75265.2 Da    PI: 5.799
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919958.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12512557454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  XP_010919958.1 512 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 557
                     799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-5468252IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.39508557IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-19511580IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.83E-15511562No hitNo description
PfamPF000104.6E-10512557IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-19512579IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-17514563IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MNLWTDDNAS MMEAFMATTT PDLQGFPWAP PPAASAAGGC HVPSSQSAVM SSAAAAPPAP  60
AYFNQETLQQ RLLTLIEGAR ETWTYAIFWQ SSVDVASGVS LLGWGDGYYK GCEEDKRKQK  120
TTNPATAAEQ EHRKRVLREL NSLISGGAGG SSPDETVEEE VTDTEWFFLV SMTQSFVNGA  180
GLPGQAFFAD APNWIAGADR LALAPCDRAR QARELGLQTM VCVPVGTGVL ELGSTDVIYQ  240
SLELMNKIRV LFNFNSFEIP SGSWLPTPAA TPAVADQGET DPSMLWLADP TMVEIKDSVS  300
PASATADISI TKPPIQFDNP SSSTVTENPS SIQMQQHHNH HQQQQQQQQQ HQNQNSNSNV  360
QTQSLFTSRE FNFAEVVLNG SAPPQAFKPE SGEILTFGNN KRNSSPAPSS LFSHHQIATV  420
TAADDKKNKR STGATSRGSN DEGMLSFSSA AARPSSAGQV KSGGGILGGA DSDHSDLEAS  480
VREVESSPVV EPEKRPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNVSK  540
MDKASLLGDA ISYINELRSK LQSLESDKEG LQTQIEALKR ERDSNPARPL QLPDQDMKMM  600
NGGRCHGVEI EVKILGVEAM IRVQCHKRNH PAARLMAALK ELDLDVYYAS VSVVKDLMIQ  660
QATVKMSSRV YTQEQLSAAL FSRVGEPPSS R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-65632554195Transcription factor MYC3
4rqw_B5e-65632554195Transcription factor MYC3
4rru_A2e-64262486227Transcription factor MYC3
4rs9_A5e-65632554195Transcription factor MYC3
4ywc_A2e-64262486227Transcription factor MYC3
4ywc_B2e-64262486227Transcription factor MYC3
4yz6_A5e-65632554195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1493501KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919958.10.0transcription factor MYC2
SwissprotQ336P50.0MYC2_ORYSJ; Transcription factor MYC2
TrEMBLA0A2H3YBB90.0A0A2H3YBB9_PHODC; transcription factor MYC2
STRINGXP_008796257.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-161bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Cai Q, et al.
    Jasmonic acid regulates spikelet development in rice.
    Nat Commun, 2014. 5: p. 3476
    [PMID:24647160]