PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919940.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 295aa    MW: 32604.9 Da    PI: 8.9202
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919940.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.7e-1482133155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A++++k+L+
  XP_010919940.1  82 QRMTHIAVERNRRRQMNEHLSVLRSLMPES---YIQRGDQASIVGGAIDFVKELE 133
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-1780150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.59E-1580137No hitNo description
PROSITE profilePS5088815.73281132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1482150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-1182133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-1187138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.749217295IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MTPSLPPHST TMRPPQXSTL LFDNAGGGDG LNSLGFAHSA PAMLGGLAVA PDSRPSSTAG  60
QGRRKRRRRP RSCKNKEEAE SQRMTHIAVE RNRRRQMNEH LSVLRSLMPE SYIQRGDQAS  120
IVGGAIDFVK ELEQLLQSLE AQKRTLQQQK GKAEKKTPRI EPGSSCSNAD DADSPPFAQF  180
FAYPQYIWCH APRDYPPPEN RSPVADIEVT LIETHANLRI LSPRRPGQLL KMVAGLQSLR  240
LTILHLNVTT LDSMVLYSLS TKVEEGCNLT TVDDIAAAIH HMLSMFEAEV TALSQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16268RRKRRRR
26367RKRRR
36370RKRRRRPR
48293RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919940.20.0transcription factor bHLH71 isoform X2
SwissprotQ9C7T42e-74BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2H3YBD90.0A0A2H3YBD9_PHODC; transcription factor bHLH71-like
STRINGXP_008796282.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-70bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]