PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919777.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 721aa    MW: 83341.3 Da    PI: 9.5765
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919777.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.41.4e-1420109199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkvl+    ++++ l++p  f+ ++ ++  ++k  tl ++  +sW+v++   ++++ +++++GW e ++a++Lk g f+vF+++++s+f   ++
  XP_010919777.1  20 FFKVLM--PGFEKK-LCIPPAFV-KYIIN-LRGKRATLVSPLRNSWSVNI--HGYKKNMWFQEGWAEIAQAHDLKLGYFMVFRYEDDSTF--SFQ 105
                     788884..455555.99******.66333.46778***************..999999**************************998999..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     vf++
  XP_010919777.1 106 VFDT 109
                     9886 PP
2B358.89.5e-19176271198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                     ff + +++ +l+++ +++p +f e++++ +  + +++l+de+grsW v ++ ++++++ +l+kGW +F+  n+L+eg  ++F+l ++ ++  ++v
  XP_010919777.1 176 FFVAIINNCNLTRNYMRIPASFKESIDMMT--KDKVILKDEEGRSWHVSVC-DRGRKGAFLAKGWHHFCVGNRLEEGNKCIFELASNnKDNIMLV 267
                     7788899999****************6663..348***************5.78888899************************98878887888 PP

                     EEE- CS
              B3  95 kvfr 98 
                      +f+
  XP_010919777.1 268 WIFK 271
                     8776 PP
3B362.85.5e-202933761298
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     ++  + +p +f ++++++++   ++ l+d +grsW v+++ +k+++++ l++GW+eF+ +n+L+ gD ++F+l++ ++ +l+v++f+
  XP_010919777.1 293 TKPYMGIPASFRASNDIETRH--QVLLKDVEGRSWHVRIC-NKGKRGVHLAQGWQEFCADNRLEKGDKCIFELVSMEDSTLLVRIFK 376
                     555689*****9999887655..7***************4.66666689999**********************999999*****97 PP
4B358.89.4e-19600695198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                     f+k++ +  v+ + rl++pk+fa+++ g +  ++t+++  ++g  +W+v + + ++ +++     W++Fv++n+L+egD+++F+l++  ++  + 
  XP_010919777.1 600 FKKAMRRDAVSDRFRLYIPKDFAAKYLGHE--QQTIVFSLPNGnGTWDVHYLVYGQCSQFCG--QWQKFVQDNNLEEGDVCIFELTRAhKDLAMD 690
                     6667777778888*************6663..4589999988879******88777777654..5*********************998999999 PP

                     EEEE- CS
              B3  94 vkvfr 98 
                     v+vfr
  XP_010919777.1 691 VHVFR 695
                     99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.2E-2016112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-2116112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.3517110IPR003340B3 DNA binding domain
CDDcd100171.87E-1818108No hitNo description
SMARTSM010198.1E-1420110IPR003340B3 DNA binding domain
PfamPF023628.1E-1220109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.2E-22172273IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.53E-19172272IPR015300DNA-binding pseudobarrel domain
CDDcd100174.06E-13174271No hitNo description
PROSITE profilePS5086314.804176273IPR003340B3 DNA binding domain
SMARTSM010198.6E-11176272IPR003340B3 DNA binding domain
PfamPF023621.7E-16176271IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-21279377IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-19281376IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.354282378IPR003340B3 DNA binding domain
SMARTSM010192.4E-9283378IPR003340B3 DNA binding domain
CDDcd100177.87E-16283376No hitNo description
PfamPF023625.8E-18293376IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.7E-23592695IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-24593695IPR015300DNA-binding pseudobarrel domain
CDDcd100177.33E-21598695No hitNo description
PROSITE profilePS5086312.844600697IPR003340B3 DNA binding domain
SMARTSM010194.5E-13600700IPR003340B3 DNA binding domain
PfamPF023624.1E-16600695IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MGSCTEMPKE RDCGLQKPAF FKVLMPGFEK KLCIPPAFVK YIINLRGKRA TLVSPLRNSW  60
SVNIHGYKKN MWFQEGWAEI AQAHDLKLGY FMVFRYEDDS TFSFQVFDTS ACRKDYSPVG  120
VQSAHMDIRQ HLNSENASKD TSHGPMMQAN RKQIGMMDER RSLPERICSS CSGRKFFVAI  180
INNCNLTRNY MRIPASFKES IDMMTKDKVI LKDEEGRSWH VSVCDRGRKG AFLAKGWHHF  240
CVGNRLEEGN KCIFELASNN KDNIMLVWIF KDSCNRLNRE KSFEVIVKDF NLTKPYMGIP  300
ASFRASNDIE TRHQVLLKDV EGRSWHVRIC NKGKRGVHLA QGWQEFCADN RLEKGDKCIF  360
ELVSMEDSTL LVRIFKQFCS MTQSCSRCMN QEEHSYSDHL DATRFHFLKI MDSDFSQQMI  420
IPKKYVKSST LKRKTRDDNL SSNKMNENEQ IVRSAKVAKH SVEQELPATS RRRLVTEKVV  480
SYLGRAIMED SLKXFPETFP FEGCDSGSSK RLHDEQLLPH LLATHKSLQV NVKIADNTLS  540
IKSAHSKIRN KEQTIRCRKV RNHCAKQELQ LTSAMRLVTE EKKARAWQKA NALQPTNPFF  600
KKAMRRDAVS DRFRLYIPKD FAAKYLGHEQ QTIVFSLPNG NGTWDVHYLV YGQCSQFCGQ  660
WQKFVQDNNL EEGDVCIFEL TRAHKDLAMD VHVFRVLDKK TPLLTGHIPI KKEGSFFXMD  720
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A6e-1757669625142B3 domain-containing transcription factor VRN1
4i1k_B6e-1757669625142B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029119998.10.0B3 domain-containing protein REM10-like isoform X2
TrEMBLA0A3Q0I5350.0A0A3Q0I535_PHODC; B3 domain-containing protein REM10-like
STRINGXP_008794890.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5078422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-38B3 family protein