PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919763.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 479aa    MW: 52916.8 Da    PI: 7.4424
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919763.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.88.4e-15741135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  XP_010919763.1  7 CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41
                    99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.5E-8153IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.81E-10445No hitNo description
CDDcd002025.79E-14653No hitNo description
Gene3DG3DSA:3.30.50.102.9E-11741IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003201.6E-12741IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MGKHGPCCHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLTNYTPMHA REPIDSEELK  60
VPKVKSISFK SKEQKLHKKK QSVITLESER EMPYSGQNFR KIADGDPSNR SSSGSVISYS  120
ESCAHFGTTD ASDMTGSAQS NVWDSQVPSK RRTGVTRSKP SPVEKLTKDL YTIWHEQQPS  180
YQGSSEGDLL YESGTPMDSF EIGYGSILIR NSKSIEEESE ASSLPVDNKS CITNEAYSGI  240
AFFPVHSESK GIRLLDSGND KLKKSTAQVT RENVRRDKFS YDKLQILRDR ESSLCSTDLQ  300
DANHKQITEG KEMVSRQKAP GFRTSASLKK TRDGQNQNYP ELKETMRSPK RLCKSGSTNL  360
LSRNPTQLNC SDVGSKLTDD ADDFLDNEGA CFSPRSFFAS PPDRGTMLAP LQFSDDSTDH  420
DLLLDVPCNG SFPEAELLCH PWKQKAAQSS SPAESGVAQG EESLSNFPSS VSNKQLNHQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919763.10.0GATA transcription factor 27 isoform X2
TrEMBLA0A2H3Y8B90.0A0A2H3Y8B9_PHODC; GATA transcription factor 27-like
STRINGXP_008794912.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.33e-61GATA transcription factor 26