PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

SBP

Protein Properties

Length: 366aa MW: 39671 Da PI: 8.6906

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010919590.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.9	4.6e-41	131	208	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +ak+yh+rhkvCe+hskap+v+v g+eqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++ XP_010919590.1 131 RCQVEGCNKALVDAKDYHKRHKVCEMHSKAPKVVVLGTEQRFCQQCSRFHVISEFDDSKRSCRRRLAGHNERRRKSTS 208 6**************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.6E-34	127	193	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.3	129	206	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.16E-38	130	211	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.0E-31	132	205	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0010229	Biological Process	inflorescence development
GO:0010321	Biological Process	regulation of vegetative phase change
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MENGGVATKS GGQGAPSSWD IWELGNWSSA GIASASSSST SSSSSSYYAH ATAAASSSYC 60 PPFSDPATMV PTAPGDHRQA QGPQYGLHNH HLTCLKLGKR QYYGEEGVAG GGNKRERLSS 120 NPPAAAAAVP RCQVEGCNKA LVDAKDYHKR HKVCEMHSKA PKVVVLGTEQ RFCQQCSRFH 180 VISEFDDSKR SCRRRLAGHN ERRRKSTSDS IRNSSLVENT MMSSRFPYIP TSSGRALSLL 240 SSKASPWVSA SDLSSRSSAA LRELIAENRA AVLARQLFSD RGGWHNVVSA NQATLSYVPH 300 QHQVPSQAQA QLTDGWNQFQ EAGSHVTLDL MQVPSSSFEI LSGRSKSKED EECCEIWKSL 360 EGTHVV

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MENGGVATKS GGQGAPSSWD IWELGNWSSA GIASASSSST SSSSSSYYAH ATAAASSSYC  60
PPFSDPATMV PTAPGDHRQA QGPQYGLHNH HLTCLKLGKR QYYGEEGVAG GGNKRERLSS  120
NPPAAAAAVP RCQVEGCNKA LVDAKDYHKR HKVCEMHSKA PKVVVLGTEQ RFCQQCSRFH  180
VISEFDDSKR SCRRRLAGHN ERRRKSTSDS IRNSSLVENT MMSSRFPYIP TSSGRALSLL  240
SSKASPWVSA SDLSSRSSAA LRELIAENRA AVLARQLFSD RGGWHNVVSA NQATLSYVPH  300
QHQVPSQAQA QLTDGWNQFQ EAGSHVTLDL MQVPSSSFEI LSGRSKSKED EECCEIWKSL  360
EGTHVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	8e-30	132	205	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00290	DAP	Transfer from AT2G33810	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010919590.1	0.0	squamosa promoter-binding-like protein 7
Swissprot	Q7XT42	7e-66	SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBL	A0A2H3YBM9	0.0	A0A2H3YBM9_PHODC; squamosa promoter-binding-like protein 7 isoform X1
STRING	XP_008796104.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10303	34	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	3e-37	squamosa promoter binding protein-like 3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]