PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919590.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family SBP
Protein Properties Length: 366aa    MW: 39671 Da    PI: 8.6906
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919590.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.94.6e-41131208178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +CqvegC++ l +ak+yh+rhkvCe+hskap+v+v g+eqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++
  XP_010919590.1 131 RCQVEGCNKALVDAKDYHKRHKVCEMHSKAPKVVVLGTEQRFCQQCSRFHVISEFDDSKRSCRRRLAGHNERRRKSTS 208
                     6**************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.6E-34127193IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.3129206IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.16E-38130211IPR004333Transcription factor, SBP-box
PfamPF031101.0E-31132205IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MENGGVATKS GGQGAPSSWD IWELGNWSSA GIASASSSST SSSSSSYYAH ATAAASSSYC  60
PPFSDPATMV PTAPGDHRQA QGPQYGLHNH HLTCLKLGKR QYYGEEGVAG GGNKRERLSS  120
NPPAAAAAVP RCQVEGCNKA LVDAKDYHKR HKVCEMHSKA PKVVVLGTEQ RFCQQCSRFH  180
VISEFDDSKR SCRRRLAGHN ERRRKSTSDS IRNSSLVENT MMSSRFPYIP TSSGRALSLL  240
SSKASPWVSA SDLSSRSSAA LRELIAENRA AVLARQLFSD RGGWHNVVSA NQATLSYVPH  300
QHQVPSQAQA QLTDGWNQFQ EAGSHVTLDL MQVPSSSFEI LSGRSKSKED EECCEIWKSL  360
EGTHVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-301322051184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00290DAPTransfer from AT2G33810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919590.10.0squamosa promoter-binding-like protein 7
SwissprotQ7XT427e-66SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBLA0A2H3YBM90.0A0A2H3YBM9_PHODC; squamosa promoter-binding-like protein 7 isoform X1
STRINGXP_008796104.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103033439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.13e-37squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]