PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919417.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family G2-like
Protein Properties Length: 425aa    MW: 46197.4 Da    PI: 6.3264
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919417.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.65.7e-28150204156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k +++WtpeLH+rFv++veqL Gs+kA+P++ilelm+++gLt+++v+SHLQkYR +
  XP_010919417.1 150 KVKVDWTPELHRRFVQVVEQL-GSDKAVPSRILELMGIDGLTRHNVASHLQKYRAH 204
                     5689*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.117147206IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-26148206IPR009057Homeodomain-like
SuperFamilySSF466899.14E-18149207IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-25150204IPR006447Myb domain, plants
PfamPF002495.1E-10153202IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MLAISPQRDS NGNEREAEVG RCLASPEEFC NKFMGGEFLE DINFDDLFAG LDDGDMLPDL  60
EVDPVEILAA FSVPYEEDSG TAAAAVEASG GDGRENPLLV DEKGLSQAEE VLSAREKADD  120
LVATASANLS FSEADRGPKT SAKGSKGKRK VKVDWTPELH RRFVQVVEQL GSDKAVPSRI  180
LELMGIDGLT RHNVASHLQK YRAHRKHLLA REVETARWSQ RWHMNTGGGG DDGDGTKRNI  240
NPWLLPIMGF SPPPVQPLKP LHVWGHPTVD QSRVLHLWPK HLAPAPSLPS RPWSPQPSLP  300
PPSFCHTHYS RGPGDGWVPS ALTQGTPCFP QPLLTARFPA PLVLGIPPRP LYRSENVVPP  360
TTKLSSSLLS LDAHPSMESI DAAIGDVLAK PWLPLRLGLK PPSLEGVQLV ESQRRGLAKI  420
PSACG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-16155206657Transcription factor LUX
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919417.10.0probable transcription factor GLK1 isoform X1
TrEMBLA0A2H3XFT71e-141A0A2H3XFT7_PHODC; probable transcription factor GLK1
STRINGXP_008783138.11e-142(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.12e-65GBF's pro-rich region-interacting factor 1