PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919284.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 289aa    MW: 33219.3 Da    PI: 8.8916
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919284.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd ll ++++ +G g+W++ ++  g+ R++k+c++rw +yl
   XP_010919284.1 14 RGPWSPEEDALLTNYIQCHGEGNWRSLPKNAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding48.22.6e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+  ++E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
   XP_010919284.1  67 RGNIGPDEEDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 112
                      677789****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.983961IPR017930Myb domain
SuperFamilySSF466891.09E-2911108IPR009057Homeodomain-like
SMARTSM007175.0E-121363IPR001005SANT/Myb domain
PfamPF002497.2E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-231568IPR009057Homeodomain-like
CDDcd001671.29E-91661No hitNo description
PROSITE profilePS5129424.15962116IPR017930Myb domain
SMARTSM007172.2E-1466114IPR001005SANT/Myb domain
PfamPF002495.6E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2469116IPR009057Homeodomain-like
CDDcd001673.03E-1072112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGRAPCCSKV GLHRGPWSPE EDALLTNYIQ CHGEGNWRSL PKNAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI GPDEEDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNS HLSKRLKGQG  120
IEVREGTSKG TTKRARISQK KSHNVNNSNI NHSSKKQQDK RKRKTEGEDT AEITRTKIYM  180
PKPTKFTPTL RSYDLIENSG VSEVPKTESA TSQEQKGDTT MEDLEINWYD IKEGGFFFEE  240
DDPNHVLAFD FPSKDRLLQG LYQEYYELLN SEGNQAQLNS FPDQSLFLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919284.10.0myb-related protein 308
TrEMBLB3TLL10.0B3TLL1_ELAGV; MYB transcription factor MYB92
STRINGXP_008775013.11e-173(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.14e-64myb domain protein 111