PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919270.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HSF
Protein Properties Length: 326aa    MW: 35412.8 Da    PI: 5.1046
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919270.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.85.4e-36291192101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++++isw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+ll++
  XP_010919270.1  29 FLTKTYQLVDDPAIDDVISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKMVPDR---------WEFANECFRRGEKRLLCD 114
                     9****************************************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  XP_010919270.1 115 IHRRK 119
                     ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-3820113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-5825118IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.31E-3526118IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.7E-3229118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-202952IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-206779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-208092IPR000232Heat shock factor (HSF)-type, DNA-binding
CDDcd146860.00564179204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAPPPAVEGE QPAAATVAAD GQRSMPTPFL TKTYQLVDDP AIDDVISWNE DGTTFIVWRP  60
AEFARDLLPK YFKHNNFSSF VRQLNTYGFR KMVPDRWEFA NECFRRGEKR LLCDIHRRKI  120
TPAAVQAAIP VAVPANRGGS PGNSGDEQVL SSNSSPGGGQ QPPAAGAGRA PPPGCSGAAE  180
LMEENERLRR ENMQLSHELG QMKNLCNNIF LLMSKYASSQ QQGCATASAA SGGPPLEVAP  240
PLDLMPLMRS PEAERVNAEE GPSTRLFGVP IRLKRSLCDD PEEADTSGPE VKPEPLDPGA  300
DPQDSSTDHR RWLLCCPPPN QRVCNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-252912129131Heat shock factor protein 1
5d5v_B2e-252912129131Heat shock factor protein 1
5d5v_D2e-252912129131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919270.10.0heat stress transcription factor B-2c
SwissprotQ652B05e-99HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBLA0A2H3YJH91e-180A0A2H3YJH9_PHODC; heat stress transcription factor B-2b
STRINGXP_008799550.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.16e-71heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rerksiri W,Zhang X,Xiong H,Chen X
    Expression and promoter analysis of six heat stress-inducible genes in rice.
    ScientificWorldJournal, 2013. 2013: p. 397401
    [PMID:24459431]