PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919252.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 753aa    MW: 81666.2 Da    PI: 6.4143
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919252.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.81.4e-2164119156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe+lF+++++p++++r eL+++l+L+ rqVk+WFqNrR+++k
  XP_010919252.1  64 KKRYHRHTPQQIQELEALFKECPHPDEKQRMELSRRLNLESRQVKFWFQNRRTQMK 119
                     688999***********************************************999 PP
2START194.64.6e-612734981206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela++a++elvk+a+  ep+W  s     e +n++e+ + f++  +     + +ea r++g+v+ ++  lve+l+d + +W  +++    + +t+
  XP_010919252.1 273 ELALAAMDELVKMAQMVEPLWIPSLeggkETLNYEEYERVFPRCIGmkpagFVSEATRETGLVIINSSALVETLMDAS-RWADMFPcmiaRTTTT 366
                     5899*********************9999999999999999998889*******************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwveh 169
                     evissg      g+lqlm aelq+lsplvp Rd+ f+R+++q  +g w++vdvS+d  +++p+     +R+++lpSg+++++++ng+skvtwveh
  XP_010919252.1 367 EVISSGmggtrnGTLQLMHAELQVLSPLVPiRDVNFLRFCKQIAEGAWAVVDVSIDGIRHNPSsPTLNMRCRRLPSGCVVQDMPNGYSKVTWVEH 461
                     **************************************************************7434459************************** PP

                     EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++++ +h+l+rsl++sgl  ga++wvatlqrqce+
  XP_010919252.1 462 AEYDESAVHQLYRSLLRSGLGLGARRWVATLQRQCEC 498
                     ***********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.55E-2151121IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-2254123IPR009057Homeodomain-like
PROSITE profilePS5007118.13961121IPR001356Homeobox domain
SMARTSM003895.6E-1962125IPR001356Homeobox domain
PfamPF000464.1E-1964119IPR001356Homeobox domain
CDDcd000861.48E-1964122No hitNo description
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PROSITE profilePS5084843.985264501IPR002913START domain
SuperFamilySSF559617.69E-35267498No hitNo description
CDDcd088753.47E-128270497No hitNo description
SMARTSM002341.3E-44273498IPR002913START domain
PfamPF018521.7E-52273498IPR002913START domain
Gene3DG3DSA:3.30.530.205.3E-4339480IPR023393START-like domain
SuperFamilySSF559612.06E-23527746No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MDGQGDRSLS SMVGGAAAGG GGGGGRDVDT VGRNKEDENE SRSGSDNLEG GSGDDIDQEN  60
PRKKKRYHRH TPQQIQELEA LFKECPHPDE KQRMELSRRL NLESRQVKFW FQNRRTQMKT  120
QMERHENTIL KQENDKLRAE NLSIREAMRN PICSNCGGPV VLGEVSLEEQ HLRIENARLK  180
DELDRVCSLA GKFLGKPISA LANPLSLPVP NSGLELAVGT IAFAGLGSVP MTSLPIVADF  240
PTAVSSPLGN VSTHARTVGT MGGVERERTM LLELALAAMD ELVKMAQMVE PLWIPSLEGG  300
KETLNYEEYE RVFPRCIGMK PAGFVSEATR ETGLVIINSS ALVETLMDAS RWADMFPCMI  360
ARTTTTEVIS SGMGGTRNGT LQLMHAELQV LSPLVPIRDV NFLRFCKQIA EGAWAVVDVS  420
IDGIRHNPSS PTLNMRCRRL PSGCVVQDMP NGYSKVTWVE HAEYDESAVH QLYRSLLRSG  480
LGLGARRWVA TLQRQCECLA ILMSSSLPTR DHNTAITASG RRSMLKLAQR MTDNFCAGVC  540
ASSAHKWSKL SVGSIGEDVR VMTRQSVDDP GEPPGVVLSA ATSVWLPVSP QRLFDFLRDE  600
RLRSEWDILS NGGPMQEMAH IAKGQDHGNA VSLLRASAVS ANQSSMLILQ ETCTDASGSM  660
VVYAPVDIPA MHVVMNGGDS AYVALLPSGF AILPDGGGGG GVQKVGGSLL TVAFQILVNS  720
QPTAKLTVES VETVNNLISC TVQKIKAALH CDP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919250.10.0homeobox-leucine zipper protein ROC5 isoform X1
RefseqXP_029119911.10.0homeobox-leucine zipper protein ROC5 isoform X1
SwissprotQ6EPF00.0ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5
TrEMBLA0A2H3YJ620.0A0A2H3YJ62_PHODC; homeobox-leucine zipper protein ROC5
STRINGXP_008799528.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Zou LP, et al.
    Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice.
    Plant Physiol., 2011. 156(3): p. 1589-602
    [PMID:21596949]
  2. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]