PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010919250.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HD-ZIP

Protein Properties

Length: 812aa MW: 87393.7 Da PI: 6.5121

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010919250.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.7	1.5e-21	123	178	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+++l+L+ rqVk+WFqNrR+++k XP_010919250.1 123 KKRYHRHTPQQIQELEALFKECPHPDEKQRMELSRRLNLESRQVKFWFQNRRTQMK 178 688999***********************************************999 PP
2	START	194.4	5.3e-61	332	557	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 ela++a++elvk+a+ ep+W s e +n++e+ + f++ + + +ea r++g+v+ ++ lve+l+d + +W +++ + +t+ XP_010919250.1 332 ELALAAMDELVKMAQMVEPLWIPSLeggkETLNYEEYERVFPRCIGmkpagFVSEATRETGLVIINSSALVETLMDAS-RWADMFPcmiaRTTTT 425 5899*******************9999999999999999998889***************************.************ PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwveh 169 evissg g+lqlm aelq+lsplvp Rd+ f+R+++q +g w++vdvS+d +++p+ +R+++lpSg+++++++ng+skvtwveh XP_010919250.1 426 EVISSGmggtrnGTLQLMHAELQVLSPLVPiRDVNFLRFCKQIAEGAWAVVDVSIDGIRHNPSsPTLNMRCRRLPSGCVVQDMPNGYSKVTWVEH 520 **********************************************************7434459********************** PP EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++++ +h+l+rsl++sgl ga++wvatlqrqce+ XP_010919250.1 521 AEYDESAVHQLYRSLLRSGLGLGARRWVATLQRQCEC 557 *********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.84E-21	110	180	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.9E-22	113	182	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.139	120	180	IPR001356	Homeobox domain
SMART	SM00389	5.6E-19	121	184	IPR001356	Homeobox domain
Pfam	PF00046	4.6E-19	123	178	IPR001356	Homeobox domain
CDD	cd00086	1.70E-19	123	181	No hit	No description
PROSITE pattern	PS00027	0	155	178	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	43.985	323	560	IPR002913	START domain
SuperFamily	SSF55961	9.34E-35	326	557	No hit	No description
CDD	cd08875	1.87E-127	329	556	No hit	No description
SMART	SM00234	1.3E-44	332	557	IPR002913	START domain
Pfam	PF01852	2.0E-52	332	557	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	6.0E-4	398	539	IPR023393	START-like domain
SuperFamily	SSF55961	2.4E-23	586	805	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 812 aa Download sequence Send to blast
MSLGGLFDGG SGGARVVADI PYGSSAMPAG AISQPRLVSP SLSKSLLSSP GLSLALQTNM 60 DGQGDRSLSS MVGGAAAGGG GGGGRDVDTV GRNKEDENES RSGSDNLEGG SGDDIDQENP 120 RKKKRYHRHT PQQIQELEAL FKECPHPDEK QRMELSRRLN LESRQVKFWF QNRRTQMKTQ 180 MERHENTILK QENDKLRAEN LSIREAMRNP ICSNCGGPVV LGEVSLEEQH LRIENARLKD 240 ELDRVCSLAG KFLGKPISAL ANPLSLPVPN SGLELAVGTI AFAGLGSVPM TSLPIVADFP 300 TAVSSPLGNV STHARTVGTM GGVERERTML LELALAAMDE LVKMAQMVEP LWIPSLEGGK 360 ETLNYEEYER VFPRCIGMKP AGFVSEATRE TGLVIINSSA LVETLMDASR WADMFPCMIA 420 RTTTTEVISS GMGGTRNGTL QLMHAELQVL SPLVPIRDVN FLRFCKQIAE GAWAVVDVSI 480 DGIRHNPSSP TLNMRCRRLP SGCVVQDMPN GYSKVTWVEH AEYDESAVHQ LYRSLLRSGL 540 GLGARRWVAT LQRQCECLAI LMSSSLPTRD HNTAITASGR RSMLKLAQRM TDNFCAGVCA 600 SSAHKWSKLS VGSIGEDVRV MTRQSVDDPG EPPGVVLSAA TSVWLPVSPQ RLFDFLRDER 660 LRSEWDILSN GGPMQEMAHI AKGQDHGNAV SLLRASAVSA NQSSMLILQE TCTDASGSMV 720 VYAPVDIPAM HVVMNGGDSA YVALLPSGFA ILPDGGGGGG VQKVGGSLLT VAFQILVNSQ 780 PTAKLTVESV ETVNNLISCT VQKIKAALHC DP

Sequence ? help Back to Top

Protein Sequence Length: 812 aa Download sequence Send to blast

MSLGGLFDGG SGGARVVADI PYGSSAMPAG AISQPRLVSP SLSKSLLSSP GLSLALQTNM  60
DGQGDRSLSS MVGGAAAGGG GGGGRDVDTV GRNKEDENES RSGSDNLEGG SGDDIDQENP  120
RKKKRYHRHT PQQIQELEAL FKECPHPDEK QRMELSRRLN LESRQVKFWF QNRRTQMKTQ  180
MERHENTILK QENDKLRAEN LSIREAMRNP ICSNCGGPVV LGEVSLEEQH LRIENARLKD  240
ELDRVCSLAG KFLGKPISAL ANPLSLPVPN SGLELAVGTI AFAGLGSVPM TSLPIVADFP  300
TAVSSPLGNV STHARTVGTM GGVERERTML LELALAAMDE LVKMAQMVEP LWIPSLEGGK  360
ETLNYEEYER VFPRCIGMKP AGFVSEATRE TGLVIINSSA LVETLMDASR WADMFPCMIA  420
RTTTTEVISS GMGGTRNGTL QLMHAELQVL SPLVPIRDVN FLRFCKQIAE GAWAVVDVSI  480
DGIRHNPSSP TLNMRCRRLP SGCVVQDMPN GYSKVTWVEH AEYDESAVHQ LYRSLLRSGL  540
GLGARRWVAT LQRQCECLAI LMSSSLPTRD HNTAITASGR RSMLKLAQRM TDNFCAGVCA  600
SSAHKWSKLS VGSIGEDVRV MTRQSVDDPG EPPGVVLSAA TSVWLPVSPQ RLFDFLRDER  660
LRSEWDILSN GGPMQEMAHI AKGQDHGNAV SLLRASAVSA NQSSMLILQE TCTDASGSMV  720
VYAPVDIPAM HVVMNGGDSA YVALLPSGFA ILPDGGGGGG VQKVGGSLLT VAFQILVNSQ  780
PTAKLTVESV ETVNNLISCT VQKIKAALHC DP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010919250.1	0.0	homeobox-leucine zipper protein ROC5 isoform X1
Refseq	XP_029119911.1	0.0	homeobox-leucine zipper protein ROC5 isoform X1
Swissprot	Q6EPF0	0.0	ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5
TrEMBL	A0A2H3YJ62	0.0	A0A2H3YJ62_PHODC; homeobox-leucine zipper protein ROC5
STRING	XP_008799528.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1203	37	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Zou LP, et al. Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice. Plant Physiol., 2011. 156(3): p. 1589-602 [PMID:21596949] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]