PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919038.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 412aa    MW: 45859.1 Da    PI: 5.7416
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919038.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12190241155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+ +N+ ++ Lr ++P++     ++ + a+i   A+++Ik+L+
  XP_010919038.1 190 QRMTHIAVERNRRRLMNDHLAALRAVMPPS---FVQRGDQASIIGGAIDFIKELE 241
                     79***************************9...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.14E-9188238No hitNo description
SuperFamilySSF474596.15E-15188255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-12188243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.875189240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-10190241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-9195246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MERLRGPINP YLAGEGRGSE CLEPEDWSPS SGREMSYGSF IPHHYHRMPF LQLLQSAMQA  60
EEETEEEEEP QLHFQVVQQQ QQHQRELLTS FPPESNFQLL LRLQSHQDKK WTAEIDSSRA  120
AEQLESCVTH ASESLSDARG VDGHEPDHHR QLPSGTTRSP AAVETRERKT RKRSRVAAAS  180
TKSAEEAESQ RMTHIAVERN RRRLMNDHLA ALRAVMPPSF VQRGDQASII GGAIDFIKEL  240
EQLLLSLQAE KRQRTSAAVS STCNTIPRSS SEEDACTGAA AAASLKGFFI SPQYTSYSQS  300
QQQRRVKEEE ENGEESPEVV AEEGGVDVEA TVVQGHVNLK VAARRRAGQL VRAIAALEEL  360
RLSVLHLNIT SLDPSSILYS LNLKMEEGCK LGSADEIATA VHQIFGYINA CR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190201RMTHIAVERNRR
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919038.10.0transcription factor bHLH57
SwissprotQ9M1289e-63BH057_ARATH; Transcription factor bHLH57
TrEMBLA0A3Q0I7710.0A0A3Q0I771_PHODC; transcription factor bHLH57
STRINGXP_008797639.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.21e-39bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]