PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010919034.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB_related | ||||||||
Protein Properties | Length: 721aa MW: 79755.6 Da PI: 7.001 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.7 | 2e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ XP_010919034.1 24 RERWTEEEHNRFLEALKLYGRA-WQRIQEHVG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.28E-17 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.859 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.8E-16 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 9.0E-14 | 23 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.7E-14 | 24 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-9 | 24 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.62E-10 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 721 aa Download sequence Send to blast |
MEGSSSGEDL IVKRRKPYTI TKRRERWTEE EHNRFLEALK LYGRAWQRIQ EHVGTKTAVQ 60 IRSHAQKFFS KLEKEALAKG IPLGHSHDIE IPPPRPKRKP SFPYPRKVDV GSLSPFEESK 120 DEKVSNSAAS QEKPVATEVE QRTKRTSGGG SCSEVFNLLQ DVPSASMSSA NKGSSNICTF 180 QHYVKEVKDK AAQGESSKTV KGNYEEEKKE ADHTDIDVDR LGRISLHSQS KFAHEERRDA 240 RKETEKFGPS LEDNQQGAQC YSKLIPGQFM DRNNAKCKQT VCSNEFIMPG TNQVEAHTDV 300 NPFKNPITLP GHESCSNCTV PSAHQQVPVF PPFTQFGSNQ DAYVSFLSSA SSSLILSTLL 360 QNSSIHAVAS LAASFWPSVN ANAPIDLTAG NLNGGMSEKQ SNPSPSMAAI AAATVAAASA 420 WWATNGLLPM FPPFHPSYAF APPSTVPGPS VDMAQAPEDN KEKKDDRPQN LLQEDHQQIM 480 DPGHPGALRT TQKASKLLPS SESELYECGR GERSLYAKLK SSAADQFEAL PDTGFLDSGK 540 TQHNKNSNRS SYSSNTLSSS EVETETMIKK HKEVNDEAEQ VHLDNHLFGE ASNHRLGSSR 600 VTNGSWKEVL GEDGPAFQAH STRELMPQRF SQLQTNDDEM PNLCKDKEVT ALPVDLRRKA 660 CESTNKFNID SEDTLVSEIE NGKLKASRRA FKPYRRCSVE AKDNQATTDE GKSDKRIRME 720 G |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00119 | DAP | Transfer from AT1G01060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010919033.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_010919034.1 | 0.0 | protein LHY isoform X1 | ||||
TrEMBL | A0A2H3Z4A9 | 0.0 | A0A2H3Z4A9_PHODC; protein LHY isoform X1 | ||||
STRING | XP_008808259.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46830.1 | 2e-42 | circadian clock associated 1 |