PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010918982.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 198aa    MW: 20710.2 Da    PI: 7.5787
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010918982.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-1989140256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr+++ +g+++AeIrd s    + +r +lg+f+taeeAa a+++a+ +++g+
  XP_010918982.1  89 HYRGVRRRP-WGKFAAEIRDSSR---HgARLWLGTFDTAEEAAMAYDRAAFRMRGA 140
                     8********.**********432...25**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.48E-2988147No hitNo description
Gene3DG3DSA:3.30.730.101.4E-3188147IPR001471AP2/ERF domain
SMARTSM003805.7E-3789153IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2389148IPR016177DNA-binding domain
PfamPF008474.2E-1589139IPR001471AP2/ERF domain
PROSITE profilePS5103223.9689147IPR001471AP2/ERF domain
PRINTSPR003672.8E-1190101IPR001471AP2/ERF domain
PRINTSPR003672.8E-11113129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MATSAQQAFD TPPSPSSSSS CSSVVTKDEA SQSHLPFNEN DSQDMVIFEV LREASAMTAV  60
AAPAPAAVAG DAGFIRKCVE PTGHVGKKHY RGVRRRPWGK FAAEIRDSSR HGARLWLGTF  120
DTAEEAAMAY DRAAFRMRGA KALLNFPPGV VIGGGGGGSA AGRGGGVVEL EDLGADYLER  180
LLRASEAGDG AKRFPVGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-3188153469ATERF1
3gcc_A4e-3188153469ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid. {ECO:0000269|PubMed:10607299, ECO:0000269|PubMed:11768541, ECO:0000269|PubMed:11971137}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: The stronger expression mediated by Pseudomonas syringae tomato during an incompatible interaction (avirulent T1 avrPto strain) than during a compatible one (virulent T1 strain) requires the resistance PTO-R as well as the Pseudomonas resistance and fenthion sensitivity (PRF) gene products. This induction is independent of ethylene (ET), jasmonate (JA) and salicylic acid (SA), and subsequent transcription of PTI5 does not require de novo protein synthesis. Also induced by Xanthomonas oryzae strain PXOA avrXa10, by Pseudomonas fluorescens strain 2-79, by PTO and by cycloheximide. Seems to not be influenced by abiotic stresses (ET, SA, JA and wounding). {ECO:0000269|PubMed:10607299, ECO:0000269|PubMed:9878629}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029121092.11e-143pathogenesis-related genes transcriptional activator PTI5
SwissprotO046819e-50PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
TrEMBLA0A2H3ZBZ73e-81A0A2H3ZBZ7_PHODC; pathogenesis-related genes transcriptional activator PTI5-like
STRINGXP_008811550.14e-82(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.13e-22ethylene responsive element binding factor 2