PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010918971.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 272aa    MW: 29795.2 Da    PI: 5.419
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010918971.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.5e-20121172256
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +++GVr+++ +g+++AeIrd  +   k +r++lg+f taeeAa a+++a+++++g+
  XP_010918971.1 121 HFRGVRRRP-WGKFAAEIRDtSR---KGARVWLGTFNTAEEAALAYDEAALRMRGP 172
                     79*******.**********331...34**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.16E-29120179No hitNo description
PfamPF008471.6E-15121171IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-23121180IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.2E-32121180IPR001471AP2/ERF domain
PROSITE profilePS5103223.209121179IPR001471AP2/ERF domain
SMARTSM003801.8E-37121185IPR001471AP2/ERF domain
PRINTSPR003672.0E-10122133IPR001471AP2/ERF domain
PRINTSPR003672.0E-10145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MASELDRSET NDKLLQSVWA SFITGGAPSS CSSDESHKKH AASQEWNEMP HLEGGEENLA  60
VLQRLPSLGR WISMGAESWD ALLSETIASN SCETSPLYSG YDACSLSKPK TLAAEKVAPK  120
HFRGVRRRPW GKFAAEIRDT SRKGARVWLG TFNTAEEAAL AYDEAALRMR GPQAHLNFPM  180
EKVTKASEGA HLEQALAGTT SGTACPVDGC IKTNHNPRKR AAREWDTYDE VPAEPPAWKR  240
NSSIEGMGSN QADIVELQDL GIDYLENLLS SF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-27120181465ATERF1
3gcc_A1e-27120181465ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010918971.10.0ethylene-responsive transcription factor 1B
TrEMBLA0A2H3ZCS41e-155A0A2H3ZCS4_PHODC; ethylene-responsive transcription factor 1B-like
STRINGXP_008798293.11e-145(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116162736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.13e-28ERF family protein