PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010918631.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 793aa MW: 85777.4 Da PI: 6.8833

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010918631.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92	7.6e-29	74	163	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY +YAk+vGF++r+s+ ++s+r+++i++r+ vCskeg+re + ++ e+++r+ra tr+gCka+++vkk+ +kw vtk+e+eHnH XP_010918631.1 74 FYAAYAKHVGFRIRISRYTRSRRDNSIISRRIVCSKEGFREARANEglsGERRQRQRAATRVGCKAMIMVKKMGPEKWIVTKFEKEHNHG 163 9*****************************************99998899999********************************5 PP
2	FAR1	88	1.4e-27	211	303	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA+++GF+ r+sk +s+r+++i++r+ vCskeg+re + k+ + k +r+r+ tr+gCka++ vk+ ++gkw+vtk+e+eHnH+l XP_010918631.1 211 FYIAYASHMGFRARISKYCRSRRDNSIISRQIVCSKEGFREIRVKNeitdEGKIKRPRVITRIGCKAMIIVKRANSGKWVVTKFEKEHNHDLK 303 9****************************************9999998889999********************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.7E-26	74	163	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.7E-25	211	302	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 793 aa Download sequence Send to blast
MLRMEDELVK PCIYSEDGRT EVTIAPMDIE PFVDEQSKMM RNPDKGEIIA SGGDTDAEPY 60 EGMEFESEEA ARTFYAAYAK HVGFRIRISR YTRSRRDNSI ISRRIVCSKE GFREARANEG 120 LSGERRQRQR AATRVGCKAM IMVKKMGPEK WIVTKFEKEH NHGPVPPRKV EVRTVRRNDD 180 FLVQSYISDG GAVQEPFEGM EFESEEAAKT FYIAYASHMG FRARISKYCR SRRDNSIISR 240 QIVCSKEGFR EIRVKNEITD EGKIKRPRVI TRIGCKAMII VKRANSGKWV VTKFEKEHNH 300 DLKVPHLESH SNAGEVINLQ GAIIKPDEMV MDESSARTQG TGQESLTVLY NQLCCEAIKY 360 AQEGAATEDS YNVAMSALKE AVEKVAAAKK AAVNIGQQGL HIGGAKQAFL VVHPAQKKAL 420 KDLQCLNEVK QSDHPVQVPL ILNIANSQLL HNPSDGVHTA NATQVLNITN AVSVLKQSLP 480 STPPTEGLIG NGLEGSDLPA EKKMAVHTVD KDVELDPMIQ KSQNLDSTDA AKADSTPRSG 540 NNLTSPGSSE TQLVAIPAVP VTLYVPVMGS LPMSCSVGTP GTPGGSYALV AASIEALPVS 600 ARPAGPSSQL QDASFQPAAA VASKSGVLAL APSTGNLSEH CKPYTGPNPQ VHATAIACGA 660 RVVPPKAAAS VIKAIEARIR SGGASVAKSA LTGGCKLLAA QSPCPCTIED GKREHASANV 720 IPESQAGSLE EMKGQKIEVG PEELMVDPDH SAVENDGQDG SLFERQVELL GTVGVSDDLS 780 MFEKRAWTEI KCD

Sequence ? help Back to Top

Protein Sequence Length: 793 aa Download sequence Send to blast

MLRMEDELVK PCIYSEDGRT EVTIAPMDIE PFVDEQSKMM RNPDKGEIIA SGGDTDAEPY  60
EGMEFESEEA ARTFYAAYAK HVGFRIRISR YTRSRRDNSI ISRRIVCSKE GFREARANEG  120
LSGERRQRQR AATRVGCKAM IMVKKMGPEK WIVTKFEKEH NHGPVPPRKV EVRTVRRNDD  180
FLVQSYISDG GAVQEPFEGM EFESEEAAKT FYIAYASHMG FRARISKYCR SRRDNSIISR  240
QIVCSKEGFR EIRVKNEITD EGKIKRPRVI TRIGCKAMII VKRANSGKWV VTKFEKEHNH  300
DLKVPHLESH SNAGEVINLQ GAIIKPDEMV MDESSARTQG TGQESLTVLY NQLCCEAIKY  360
AQEGAATEDS YNVAMSALKE AVEKVAAAKK AAVNIGQQGL HIGGAKQAFL VVHPAQKKAL  420
KDLQCLNEVK QSDHPVQVPL ILNIANSQLL HNPSDGVHTA NATQVLNITN AVSVLKQSLP  480
STPPTEGLIG NGLEGSDLPA EKKMAVHTVD KDVELDPMIQ KSQNLDSTDA AKADSTPRSG  540
NNLTSPGSSE TQLVAIPAVP VTLYVPVMGS LPMSCSVGTP GTPGGSYALV AASIEALPVS  600
ARPAGPSSQL QDASFQPAAA VASKSGVLAL APSTGNLSEH CKPYTGPNPQ VHATAIACGA  660
RVVPPKAAAS VIKAIEARIR SGGASVAKSA LTGGCKLLAA QSPCPCTIED GKREHASANV  720
IPESQAGSLE EMKGQKIEVG PEELMVDPDH SAVENDGQDG SLFERQVELL GTVGVSDDLS  780
MFEKRAWTEI KCD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010918633.1	0.0	uncharacterized protein LOC105042954
Refseq	XP_019705223.1	0.0	uncharacterized protein LOC105042954
TrEMBL	A0A2H3ZHL7	0.0	A0A2H3ZHL7_PHODC; uncharacterized protein LOC103696283
STRING	XP_008776072.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9031	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-27	FAR1 family protein