PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010918535.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 685aa    MW: 76482 Da    PI: 4.9545
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010918535.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.95e-15486533355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++h   ErrRR+++N++f  Lr+l+P++      K++Ka+iL  ++eY+k+Lq
  XP_010918535.1 486 ASHVLSERRRREKLNEKFLVLRSLVPSL-----SKVDKASILGDTIEYLKELQ 533
                     589999*********************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-5720203IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.88E-19483549IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.371483532IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-12486533IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-15487537No hitNo description
Gene3DG3DSA:4.10.280.102.0E-19487544IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-17489538IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MCLAMAAGAQ NPEELPEKHL RKQLAAAVRN IQWSYAIFWS ISARQQGVLA WSDGYYNGDI  60
KTRKTTQPTE FKADQMGLQR SEQLRELYES LSAGDSNQQS KRPFASLSPE DLTDTEWYYL  120
VCMSFTFSPG QGLPGKAFAS NQDIWLSNAQ FADSKIFSRS LLAKSASIQT VVCIPFMDGV  180
LELGTTESVL EDSTLIQQVT TSFWELPIPV CSEQSVSSPP LAEKDEDILC PDLEREIVDT  240
MILDEHNLVA DGQAPLEGGP TAFPFGSHSY ASDRENELIQ DQVEELQANI CEEPDIDSPH  300
DSSNECCPNQ QANDSFRIEG LNGASQVHNG QLMDDEFSNG LHGSLNSSDC ISQSFANPQR  360
VLSFPMGERI KNHVLDSLQD GDFTKLISLD LQGEKSHYTK TIAAILRNSN QLASIQCFPC  420
GSHESSFVVW KRSMNVPKPH STISQKLVKK ILVDTAWMHG GQPLKTQEEN GLRNKVWKVE  480
GDDANASHVL SERRRREKLN EKFLVLRSLV PSLSKVDKAS ILGDTIEYLK ELQRKVEELE  540
SRRELGEFEA RGTRKHPDVS ERTSDNYGNK EIANGRKPSV NKRKACDMDE AEVEHHWVLP  600
KDGPADVKVT VIEKEVLIEM HCPWRECLLL EIVDATSNLH LDPFSVQSST VDDNLAVTIK  660
AKFRGSVVAS PGMIKRVLQR VVGKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-21142033192Transcription factor MYC3
4rqw_B1e-21142033192Transcription factor MYC3
4rs9_A1e-21142033192Transcription factor MYC3
4yz6_A1e-21142033192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1491496ERRRRE
2492497RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010918535.10.0transcription factor GLABRA 3
TrEMBLA0A2H3ZYP60.0A0A2H3ZYP6_PHODC; transcription factor GLABRA 3
STRINGXP_008806796.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-170bHLH family protein