PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010918529.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | HSF | ||||||||
Protein Properties | Length: 179aa MW: 20822.9 Da PI: 10.0895 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.2 | 1.5e-34 | 28 | 119 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+ye++e +e +++sw+e+g+ fvv+ ++ef++ +LpkyFkh nfaSF+RQLn+YgFkk+ +++ weF+h++F+kg+++ll + XP_010918529.1 28 FLSKTYELVEGSEAPHVVSWNEEGSGFVVWLPQEFSQFILPKYFKHCNFASFIRQLNTYGFKKSASDR---------WEFRHEKFQKGRRHLLAE 113 9***************************************************************9999.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i r+k XP_010918529.1 114 ITRRKC 119 ***986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.6E-36 | 21 | 111 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.4E-30 | 23 | 117 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.8E-47 | 24 | 117 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-16 | 28 | 51 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.0E-30 | 28 | 117 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-16 | 66 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-16 | 79 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MEASRKTASA SNRPGRTPSM RARSLAPFLS KTYELVEGSE APHVVSWNEE GSGFVVWLPQ 60 EFSQFILPKY FKHCNFASFI RQLNTYGFKK SASDRWEFRH EKFQKGRRHL LAEITRRKCE 120 PSVFPSFLKA CEKCPPPVEN DLLEENKVLQ QKNAELLSQI KHYKALEGEL LKRLSQYVR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5w_B | 1e-19 | 26 | 117 | 2 | 104 | Putative transcription factor |
5d5x_B | 1e-19 | 26 | 117 | 2 | 104 | Putative transcription factor |
5d5x_E | 1e-19 | 26 | 117 | 2 | 104 | Putative transcription factor |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:9645433}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010918529.1 | 1e-131 | heat stress transcription factor B-4b-like | ||||
Swissprot | Q96320 | 1e-38 | HSFB1_ARATH; Heat stress transcription factor B-1 | ||||
TrEMBL | A0A3Q0I5X6 | 1e-110 | A0A3Q0I5X6_PHODC; heat stress transcription factor B-4b-like | ||||
STRING | XP_010242971.1 | 1e-65 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 5e-41 | heat shock factor 4 |