PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010918201.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 324aa MW: 36524.3 Da PI: 4.8487 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.1 | 1.1e-11 | 159 | 201 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk +K++ +iL +++Y+k+L XP_010918201.1 159 MAERRRRKRLNDRLSLLRSVVPKI-----TKMDRTSILGDTIDYVKEL 201 79*********************7.....6****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.977 | 152 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-15 | 156 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-12 | 158 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-9 | 159 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.45E-5 | 159 | 206 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.2E-14 | 159 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MGMDEQSLLQ ELFAPWRQTS EPNCFQGGVD CFQGTACPVS PNYAAFEELV LQEEPNFDCL 60 NEVYRPFGSG FHSTAPELQS PCTMMTHSTI SCSTQENEEI GVIHEGNHST WYQGQSIWKV 120 EPMQTMDNHL VFGGTGSSCL ERKNSRLKKV DGLPSKNLMA ERRRRKRLND RLSLLRSVVP 180 KITKMDRTSI LGDTIDYVKE LLERIKSLQD EIKVGQDQLN LLDTFNGVNP NEMLPRISPK 240 FNVERRERDT RIEISCAAKP GSLLSTVYTL EALGLEIQQC VASCFSDFGM QASCSEDKEQ 300 RAFISSEEME QALFSTAVYG GKYV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 160 | 167 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010918201.2 | 0.0 | transcription factor bHLH93-like | ||||
Swissprot | Q9LSL1 | 8e-67 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A2H3Y1C6 | 0.0 | A0A2H3Y1C6_PHODC; transcription factor bHLH93-like | ||||
STRING | XP_008791955.1 | 1e-119 | (Phoenix dactylifera) | ||||
STRING | XP_008806159.1 | 1e-118 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1302 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 2e-61 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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