PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010918188.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 493aa    MW: 54906.7 Da    PI: 4.8479
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010918188.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-13294337654
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      + Er+RR+++N+++  Lr+l+P++     +K + a+i+  A+eYIk+L
  XP_010918188.1 294 FATERQRREQLNEKYKALRSLVPNP-----TKSDRASIVGDAIEYIKEL 337
                     688**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.605288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-11294337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-15294356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-13294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-13295345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.02E-12297342No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MFDENGYLDP PYDPNPLPAT LVPSPSLAPT YDNSNNTTTN NNSGLEDNIR ISTFSLEDLS  60
NPNNLPSDEA AMVMGLDHLQ HQLGFDLEQE LHSHMIQDAP PMGGTNIWDS TMQDIQDSTI  120
HHQQNYEGQQ QHTAVQQNLQ SYDDTPYPDP SSHMVAPDLL NLLKLPTIAP MFPPTTSISF  180
SNPSLKPRNI PLDVYSELPG AAVPDNGPML YDSSLHLGYP APQPHLLKDL FHSLPQNYGL  240
FCGVDEGEAM VGVGGGIGGG HVFQEMDGRQ FDSTVLDYRR EMGGLGKGEV KPNFATERQR  300
REQLNEKYKA LRSLVPNPTK SDRASIVGDA IEYIKELLRT IEELKLLVGK KRHGRERIKM  360
MTMEDEGTAD MESSSMRPLR VDNDHPFNGA LRSSWLQRRS KESTVDVRII DDEVYIKLIQ  420
KKKANCLLYI AKVFDELQLE LIHASGGNIG DHYSFLFNTK ICEGSSAYAG AIAKKVLEVV  480
DRQQPALTFP ASF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00285DAPTransfer from AT2G31220Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010918188.10.0transcription factor EAT1-like
SwissprotQ7X8R01e-145EAT1_ORYSJ; Transcription factor EAT1
TrEMBLA0A2H3YKC00.0A0A2H3YKC0_PHODC; transcription factor EAT1-like
STRINGXP_008800057.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.11e-66bHLH family protein