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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010917943.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | YABBY | ||||||||
Protein Properties | Length: 163aa MW: 18001.5 Da PI: 8.5085 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 202 | 2.4e-62 | 3 | 155 | 3 | 170 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 + ++eqvCyv+CnfCntil+vsvP + ++++vtvrCGhC++llsvnl q+l+ + ++l++ ++l++ ++++ ++ XP_010917943.1 3 AHIATEQVCYVHCNFCNTILVVSVPGSNSLTIVTVRCGHCANLLSVNLGALLQTLPQGVQ---------NHNLGS--QDLNMDCGSSSKCNKVSL 86 56789*********************************************9999987664.........344555..455554444444444444 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++++ +++ +p + PekrqrvPsaynrfikeei+r+ka+nPdishreafsaaaknWahfP+i fgl XP_010917943.1 87 MNSMENVQQQTLP----IRSVPEKRQRVPSAYNRFIKEEIRRLKATNPDISHREAFSAAAKNWAHFPHIQFGL 155 4456666666666....6778**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.4E-69 | 6 | 155 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 5.63E-8 | 102 | 149 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.1E-5 | 104 | 149 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MSAHIATEQV CYVHCNFCNT ILVVSVPGSN SLTIVTVRCG HCANLLSVNL GALLQTLPQG 60 VQNHNLGSQD LNMDCGSSSK CNKVSLMNSM ENVQQQTLPI RSVPEKRQRV PSAYNRFIKE 120 EIRRLKATNP DISHREAFSA AAKNWAHFPH IQFGLSVDGD KQQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010917943.1 | 1e-120 | protein YABBY 2 isoform X7 | ||||
Swissprot | Q10FZ7 | 1e-62 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A2H3XYA7 | 1e-111 | A0A2H3XYA7_PHODC; protein YABBY 2-like isoform X3 | ||||
STRING | XP_008790352.1 | 1e-110 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 2e-63 | YABBY family protein |