![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010917941.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 166aa MW: 18371 Da PI: 8.7112 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 215.9 | 1.3e-66 | 3 | 158 | 3 | 170 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 + ++eqvCyv+CnfCntil+vsvP + ++++vtvrCGhC++llsvnl q+l+ + l++++ +++l++ ++++ ++ XP_010917941.1 3 AHIATEQVCYVHCNFCNTILVVSVPGSNSLTIVTVRCGHCANLLSVNLGALLQTLPQGVQ--------KLQNHNLGSQDLNMDCGSSSKCNKVSL 89 56789**********************************************999998775........455666666666666655555555555 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++++ +++ +p + PekrqrvPsaynrfikeei+r+ka+nPdishreafsaaaknWahfP+i fgl XP_010917941.1 90 MNSMENVQQQTLP----IRSVPEKRQRVPSAYNRFIKEEIRRLKATNPDISHREAFSAAAKNWAHFPHIQFGL 158 5566666666666....6778**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.1E-70 | 6 | 158 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 5.89E-8 | 105 | 152 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.2E-5 | 107 | 152 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 166 aa Download sequence Send to blast |
MSAHIATEQV CYVHCNFCNT ILVVSVPGSN SLTIVTVRCG HCANLLSVNL GALLQTLPQG 60 VQKLQNHNLG SQDLNMDCGS SSKCNKVSLM NSMENVQQQT LPIRSVPEKR QRVPSAYNRF 120 IKEEIRRLKA TNPDISHREA FSAAAKNWAH FPHIQFGLSV DGDKQQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010917941.1 | 1e-122 | protein YABBY 2 isoform X5 | ||||
Swissprot | Q10FZ7 | 6e-63 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A2H3XXQ7 | 1e-113 | A0A2H3XXQ7_PHODC; protein YABBY 2-like isoform X1 | ||||
STRING | XP_008790352.1 | 1e-114 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08465.1 | 2e-64 | YABBY family protein |