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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010917940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | YABBY | ||||||||
Protein Properties | Length: 217aa MW: 24074.7 Da PI: 8.1122 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 176 | 2.4e-54 | 3 | 145 | 3 | 161 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 + ++eqvCyv+CnfCntil+vsvP + ++++vtvrCGhC++llsvnl q+l+ + +++ +++l++ ++++ ++ XP_010917940.1 3 AHIATEQVCYVHCNFCNTILVVSVPGSNSLTIVTVRCGHCANLLSVNLGALLQTLPQGVQ-----------NHNLGSQDLNMDCGSSSKCNKVSL 86 56789*********************************************9999987654...........444445555555544444444455 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161 ++++++ +++ +p ir PekrqrvPsaynrfikeei+r+ka+nPdishreafsaaakn XP_010917940.1 87 MNSMENVQQQTLP-----IRLPEKRQRVPSAYNRFIKEEIRRLKATNPDISHREAFSAAAKNVV 145 5557777777777.....9*******************************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.3E-60 | 6 | 143 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 7.33E-6 | 99 | 141 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MSAHIATEQV CYVHCNFCNT ILVVSVPGSN SLTIVTVRCG HCANLLSVNL GALLQTLPQG 60 VQNHNLGSQD LNMDCGSSSK CNKVSLMNSM ENVQQQTLPI RLPEKRQRVP SAYNRFIKEE 120 IRRLKATNPD ISHREAFSAA AKNVVFLFLH QKSGHTFLIS NSGYPWMGIN NNSLARPLIA 180 CQEEAHGEQM VELNYMFIGI ISICVSVRSP CTYNDHI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019704397.1 | 1e-109 | protein YABBY 2 isoform X4 | ||||
Swissprot | Q10FZ7 | 8e-54 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A2H3ZPG9 | 7e-93 | A0A2H3ZPG9_PHODC; protein YABBY 2-like isoform X4 | ||||
STRING | XP_008790352.1 | 2e-89 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 2e-50 | YABBY family protein |