PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010917937.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

YABBY

Protein Properties

Length: 218aa MW: 24147.7 Da PI: 8.1122

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010917937.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	175.6	3e-54	3	146	3	161
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 + ++eqvCyv+CnfCntil+vsvP + ++++vtvrCGhC++llsvnl q+l+ + ++l++ ++l++ ++++ ++ XP_010917937.1 3 AHIATEQVCYVHCNFCNTILVVSVPGSNSLTIVTVRCGHCANLLSVNLGALLQTLPQGVQ---------NHNLGS--QDLNMDCGSSSKCNKVSL 86 56789*******************************************9999987664.........344555..455554444444444444 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161 ++++++ +++ +p + PekrqrvPsaynrfikeei+r+ka+nPdishreafsaaakn XP_010917937.1 87 MNSMENVQQQTLP----IRSVPEKRQRVPSAYNRFIKEEIRRLKATNPDISHREAFSAAAKNVV 146 4456666666666....6778***************************************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.4E-59	6	144	IPR006780	YABBY protein
SuperFamily	SSF47095	1.4E-5	102	142	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MSAHIATEQV CYVHCNFCNT ILVVSVPGSN SLTIVTVRCG HCANLLSVNL GALLQTLPQG 60 VQNHNLGSQD LNMDCGSSSK CNKVSLMNSM ENVQQQTLPI RSVPEKRQRV PSAYNRFIKE 120 EIRRLKATNP DISHREAFSA AAKNVVFLFL HQKSGHTFLI SNSGYPWMGI NNNSLARPLI 180 ACQEEAHGEQ MVELNYMFIG IISICVSVRS PCTYNDHI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019704396.1	1e-110	protein YABBY 2 isoform X3
Swissprot	Q10FZ7	3e-52	YAB2_ORYSJ; Protein YABBY 2
TrEMBL	A0A2H3XYA7	2e-93	A0A2H3XYA7_PHODC; protein YABBY 2-like isoform X3
STRING	XP_008790352.1	3e-92	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-48	YABBY family protein