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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010917936.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | YABBY | ||||||||
Protein Properties | Length: 220aa MW: 24444.1 Da PI: 8.2745 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 188.6 | 3.2e-58 | 3 | 148 | 3 | 161 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 + ++eqvCyv+CnfCntil+vsvP + ++++vtvrCGhC++llsvnl q+l+ + l++++ +++l++ ++++ ++ XP_010917936.1 3 AHIATEQVCYVHCNFCNTILVVSVPGSNSLTIVTVRCGHCANLLSVNLGALLQTLPQGVQ--------KLQNHNLGSQDLNMDCGSSSKCNKVSL 89 56789**********************************************999998775........456666666666666666665555566 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161 ++++++ +++ +p ir PekrqrvPsaynrfikeei+r+ka+nPdishreafsaaakn XP_010917936.1 90 MNSMENVQQQTLP-----IRLPEKRQRVPSAYNRFIKEEIRRLKATNPDISHREAFSAAAKNVV 148 6667777777777.....9*******************************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.9E-61 | 6 | 146 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 7.46E-6 | 102 | 144 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MSAHIATEQV CYVHCNFCNT ILVVSVPGSN SLTIVTVRCG HCANLLSVNL GALLQTLPQG 60 VQKLQNHNLG SQDLNMDCGS SSKCNKVSLM NSMENVQQQT LPIRLPEKRQ RVPSAYNRFI 120 KEEIRRLKAT NPDISHREAF SAAAKNVVFL FLHQKSGHTF LISNSGYPWM GINNNSLARP 180 LIACQEEAHG EQMVELNYMF IGIISICVSV RSPCTYNDHI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019704395.1 | 1e-111 | protein YABBY 2 isoform X2 | ||||
Swissprot | Q10FZ7 | 4e-54 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A2H3XXR9 | 4e-95 | A0A2H3XXR9_PHODC; protein YABBY 2-like isoform X2 | ||||
STRING | XP_008790352.1 | 1e-93 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 2e-51 | YABBY family protein |