PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917936.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family YABBY
Protein Properties Length: 220aa    MW: 24444.1 Da    PI: 8.2745
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917936.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY188.63.2e-5831483161
           YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 
                      + ++eqvCyv+CnfCntil+vsvP + ++++vtvrCGhC++llsvnl    q+l+   +         l++++  +++l++   ++++ ++   
  XP_010917936.1   3 AHIATEQVCYVHCNFCNTILVVSVPGSNSLTIVTVRCGHCANLLSVNLGALLQTLPQGVQ--------KLQNHNLGSQDLNMDCGSSSKCNKVSL 89 
                     56789**********************************************999998775........456666666666666666665555566 PP

           YABBY  98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161
                     ++++++ +++ +p     ir PekrqrvPsaynrfikeei+r+ka+nPdishreafsaaakn  
  XP_010917936.1  90 MNSMENVQQQTLP-----IRLPEKRQRVPSAYNRFIKEEIRRLKATNPDISHREAFSAAAKNVV 148
                     6667777777777.....9*******************************************65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.9E-616146IPR006780YABBY protein
SuperFamilySSF470957.46E-6102144IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MSAHIATEQV CYVHCNFCNT ILVVSVPGSN SLTIVTVRCG HCANLLSVNL GALLQTLPQG  60
VQKLQNHNLG SQDLNMDCGS SSKCNKVSLM NSMENVQQQT LPIRLPEKRQ RVPSAYNRFI  120
KEEIRRLKAT NPDISHREAF SAAAKNVVFL FLHQKSGHTF LISNSGYPWM GINNNSLARP  180
LIACQEEAHG EQMVELNYMF IGIISICVSV RSPCTYNDHI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019704395.11e-111protein YABBY 2 isoform X2
SwissprotQ10FZ74e-54YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A2H3XXR94e-95A0A2H3XXR9_PHODC; protein YABBY 2-like isoform X2
STRINGXP_008790352.11e-93(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.12e-51YABBY family protein