PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

XP_010917679.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

TALE

Protein Properties

Length: 671aa MW: 73981.9 Da PI: 6.5112

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010917679.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.4e-09	433	470	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +qV++WF N R + XP_010917679.1 433 FEHflHPYPKDSEKLMLARQTGLTRSQVSNWFINARVR 470 664459******************************88 PP
2	BELL	122.2	2.2e-39	296	367	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erq+lq+k +kLl +l+eVd rYkqy++q+q+v+ssF+++ag g+akpYt+lAl++iS+hFrcL+dai +qi XP_010917679.1 296 ERQDLQNKVTKLLAMLDEVDSRYKQYYHQMQIVVSSFDIIAGFGAAKPYTALALQTISQHFRCLRDAIGGQI 367 799*****************************************************************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.0E-55	217	365	IPR006563	POX domain
Pfam	PF07526	2.4E-49	223	363	IPR006563	POX domain
PROSITE profile	PS50071	12.406	411	474	IPR001356	Homeobox domain
SMART	SM00389	1.0E-9	414	478	IPR001356	Homeobox domain
CDD	cd00086	1.20E-12	414	475	No hit	No description
SuperFamily	SSF46689	1.45E-17	415	481	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-28	417	480	IPR009057	Homeodomain-like
Pfam	PF05920	1.8E-17	431	470	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence Send to blast
MATFYTSSTN QRDAMPNLCL RDPGHTPYPE PSITGNMLYL NYPSSSPYSD ALTGDAQSQQ 60 NSVELPVPTA MISQGSSVEG AHMVSSHLGK NAYNAWRDGR IEMSFMQTIG GPISGSGNLV 120 RNSVSNECQM GLQTQLGTLN GQNLSLQQSN VSTMQNQGLS LSLSTEILVP SFQYRPTSSD 180 ISLFGPHQSN LGNGGSCRDD DSGNKNMHAN LSPYGVSSHT SSVPNSKYLK AAQELLVEVV 240 NVRKALKHKA DNGQSVHSSA GTTGCKDTDG ASKSEGMPSN PQESTANSSS ELSPSERQDL 300 QNKVTKLLAM LDEVDSRYKQ YYHQMQIVVS SFDIIAGFGA AKPYTALALQ TISQHFRCLR 360 DAIGGQIRAT RKSLGEQDSS ISQGGGIARL RYIDQQLRQQ RAMQQFGMMQ QHSWRPQRGL 420 PESSVSILRA WLFEHFLHPY PKDSEKLMLA RQTGLTRSQV SNWFINARVR LWKPMIEDMY 480 KEEFGGTEID SNSSSENPPK CKDEIRSSED REDLQNFSAE RSQTNQLNDS KSKAIHTMDT 540 GRASASFQHE TNSNNAYMNL KLNEQRPTSD DGSLLQDTLT HSDGSGRYMA YQMAEVGRYG 600 NTGFSLTLGL QHCDGSVPIS NNQHRFLTVR GEDIYGAAAP IGADTADYEF MNMEDRQHRF 660 GSSNLQHDFV A

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence Send to blast

MATFYTSSTN QRDAMPNLCL RDPGHTPYPE PSITGNMLYL NYPSSSPYSD ALTGDAQSQQ  60
NSVELPVPTA MISQGSSVEG AHMVSSHLGK NAYNAWRDGR IEMSFMQTIG GPISGSGNLV  120
RNSVSNECQM GLQTQLGTLN GQNLSLQQSN VSTMQNQGLS LSLSTEILVP SFQYRPTSSD  180
ISLFGPHQSN LGNGGSCRDD DSGNKNMHAN LSPYGVSSHT SSVPNSKYLK AAQELLVEVV  240
NVRKALKHKA DNGQSVHSSA GTTGCKDTDG ASKSEGMPSN PQESTANSSS ELSPSERQDL  300
QNKVTKLLAM LDEVDSRYKQ YYHQMQIVVS SFDIIAGFGA AKPYTALALQ TISQHFRCLR  360
DAIGGQIRAT RKSLGEQDSS ISQGGGIARL RYIDQQLRQQ RAMQQFGMMQ QHSWRPQRGL  420
PESSVSILRA WLFEHFLHPY PKDSEKLMLA RQTGLTRSQV SNWFINARVR LWKPMIEDMY  480
KEEFGGTEID SNSSSENPPK CKDEIRSSED REDLQNFSAE RSQTNQLNDS KSKAIHTMDT  540
GRASASFQHE TNSNNAYMNL KLNEQRPTSD DGSLLQDTLT HSDGSGRYMA YQMAEVGRYG  600
NTGFSLTLGL QHCDGSVPIS NNQHRFLTVR GEDIYGAAAP IGADTADYEF MNMEDRQHRF  660
GSSNLQHDFV A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	7e-17	420	477	1	58	Homeobox protein Meis1
4xrs_B	7e-17	420	477	1	58	Homeobox protein Meis1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029119531.1	0.0	BEL1-like homeodomain protein 7 isoform X3
Refseq	XP_029119532.1	0.0	BEL1-like homeodomain protein 7 isoform X3
Refseq	XP_029119533.1	0.0	BEL1-like homeodomain protein 7 isoform X3
Refseq	XP_029119534.1	0.0	BEL1-like homeodomain protein 7 isoform X3
Refseq	XP_029119535.1	0.0	BEL1-like homeodomain protein 7 isoform X3
Refseq	XP_029119536.1	0.0	BEL1-like homeodomain protein 7 isoform X3
Refseq	XP_029119539.1	0.0	BEL1-like homeodomain protein 7 isoform X3
Swissprot	Q9SIW1	1e-134	BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBL	A0A2H3ZE91	0.0	A0A2H3ZE91_PHODC; BEL1-like homeodomain protein 7 isoform X1
STRING	XP_008812196.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16400.1	1e-129	BEL1-like homeodomain 7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]