PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917615.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HSF
Protein Properties Length: 367aa    MW: 42431.2 Da    PI: 4.4708
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917615.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.36.6e-35441352102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+ ++++i ws+++nsfvv d+ +fa ++Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll++
  XP_010917615.1  44 FLNKTYDMVDDPGTDRVILWSSTNNSFVVRDPATFAMTLLPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLKT 129
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikr+k 
  XP_010917615.1 130 IKRRKP 135
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.36E-3440133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-5940133IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.2E-3840133IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.7E-194467IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.6E-3144133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-198294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-1995107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDPVLNMVKE EYLEAEVSPS RLEDAPMEAP RPMEGLHEVG PPPFLNKTYD MVDDPGTDRV  60
ILWSSTNNSF VVRDPATFAM TLLPRYFKHS NFSSFVRQLN TYGFRKVDPD RWEFANEGFL  120
RGQRHLLKTI KRRKPPSHPP PRQKNLDPCL EVGRFGFDGE IDRLERDKNI LMAEIVKLRQ  180
EQQTTRTHLQ AMEERLHNAE QKQQQMMGFL ARAVRSPDFL QQLLQQQERR KELEAAISKK  240
RRRPIDRVPY HGEGETSESQ DFEARFGIET EEMGSFYDPE VSELESLALE IQGLRKSEEE  300
EEEEEEEDDD KPEEKQGGGT ELNDDFWEEL LNGGIGEEKD GSEGRDDLDD VNVLAEKLGY  360
LSSSSPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-254213318120Heat shock factor protein 1
5d5u_B7e-254213327129Heat shock factor protein 1
5d5v_B7e-254213327129Heat shock factor protein 1
5d5v_D7e-254213327129Heat shock factor protein 1
5hdg_A6e-25421338110Heat shock factor protein 1
5hdn_A6e-25421338110Heat shock factor protein 1
5hdn_B6e-25421338110Heat shock factor protein 1
5hdn_C6e-25421338110Heat shock factor protein 1
5hdn_D6e-25421338110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126132LKTIKRR
2228242RRKELEAAISKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019705092.10.0heat stress transcription factor A-2c
RefseqXP_019705093.10.0heat stress transcription factor A-2c
RefseqXP_029119517.10.0heat stress transcription factor A-2c
SwissprotQ338B01e-143HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLA0A2H3ZHB70.0A0A2H3ZHB7_PHODC; heat stress transcription factor A-2c-like isoform X1
STRINGXP_008813517.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-106heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Singh A, et al.
    OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).
    Cell Stress Chaperones, 2012. 17(2): p. 243-54
    [PMID:22147560]