PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917554.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family SBP
Protein Properties Length: 393aa    MW: 43111 Da    PI: 7.5013
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917554.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.33.3e-4187163278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     C v+gC++dls++++yhrrhkvCevhsk+p v+v g+eqrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+q+
  XP_010917554.1  87 CLVDGCKSDLSNCRDYHRRHKVCEVHSKTPIVMVGGQEQRFCQQCSRFHLLVEFDEVKRSCRKRLDGHNRRRRKPQQ 163
                     **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.4E-3382148IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.98384161IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.59E-3985166IPR004333Transcription factor, SBP-box
PfamPF031101.8E-3087160IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MDWDSKISSW GLPELEQHAE PNIGSVVGSS GVQGRQECSV DLKLGGLGEF RPPDRWKEQP  60
RISNPVSSAG PSKRARAPSS AAPNVSCLVD GCKSDLSNCR DYHRRHKVCE VHSKTPIVMV  120
GGQEQRFCQQ CSRFHLLVEF DEVKRSCRKR LDGHNRRRRK PQQESINSGS TFPNHHVTGF  180
LTYPQIFATA TPETNWAGIV KSKEDALYAH YPPLHFMDRQ QQFSSFPRSF KEGKQFPFLQ  240
DSDTAFRSGA TLEPTICQPL KTNSLAESSS SSSSKFFSDG LTQVLDSDCA LSLLSSPTQT  300
SGINVGQMVP ADRIPMGQPL VSTIQYSDLG RYSGSQASNS VSPTGFSCSG IEDEHVGTVL  360
VSNANDADLH CQSIFHVGGQ GPSTSQPLPF SWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-27871601184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143160KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917555.10.0squamosa promoter-binding-like protein 18
RefseqXP_010917556.10.0squamosa promoter-binding-like protein 18
SwissprotQ0J0K11e-90SPL18_ORYSJ; Squamosa promoter-binding-like protein 18
TrEMBLA0A2H3X1U50.0A0A2H3X1U5_PHODC; squamosa promoter-binding-like protein 18
STRINGXP_008777032.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.16e-44SBP family protein