PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917385.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 546aa    MW: 58504.4 Da    PI: 5.3
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917385.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11356401555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+++Er RR++i +++ +L+el+P++      K +Ka++L + ++Y+k Lq
  XP_010917385.1 356 HSIAERLRREKIAERMKNLQELVPNS-----NKTDKASMLDEIIDYVKFLQ 401
                     99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.9E-17349411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.28E-12349405No hitNo description
PROSITE profilePS5088817.263351400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-16353410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-9356401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-13357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MDDFIDPFLS FPTWPDANTP ARSSWIGTAV SQTTSLLAGS MEAYGGDEKN QPVSVIPSSR  60
IIGDACMEEL NLLSHDSNSS MFLDGNIKYG IDKDIFPSGK LSMHKVHRQN SQPSFQDNVT  120
QESSFSLQGV IESNSTAETF GSELNPSCSV TLPHSTLTMS SSIESNGSEL SNFRQSLGDT  180
HSISSLPAMW PSSYTGVSSL MGQGRLQAFG FQGLESDNVM LRETSVENGK FAQLEDLPAA  240
SLHEHNELHN PNLPSFSAGQ QIKLTSGGLQ KQEQNGLHNL CLPSLASPPQ MSSTKTAGVQ  300
ICQQLPPSPQ GNTSKHHMNH TSSTQSQSAP ANAGGGCNGA VKPRVRARRG QATDPHSIAE  360
RLRREKIAER MKNLQELVPN SNKTDKASML DEIIDYVKFL QLQVKVLSMS RLGAAGAVVP  420
LLTDSQAEGS GSLLLSSSSS VGQGADLSES QDTLAFEQEV VKLMESNVTM AMQYLQNKGL  480
CLMPIALASA ISNQKGSSTC TIPPDRRKPD MNLGVICPSN QSFMERNGPE DGANGCNGPV  540
VKQEEA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917385.10.0transcription factor bHLH78
TrEMBLA0A2H3YEK70.0A0A2H3YEK7_PHODC; transcription factor bHLH10-like
STRINGXP_008797366.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.13e-58LJRHL1-like 3