PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010917385.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 546aa MW: 58504.4 Da PI: 5.3 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.8 | 1.4e-11 | 356 | 401 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+P++ K +Ka++L + ++Y+k Lq XP_010917385.1 356 HSIAERLRREKIAERMKNLQELVPNS-----NKTDKASMLDEIIDYVKFLQ 401 99***********************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.9E-17 | 349 | 411 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.28E-12 | 349 | 405 | No hit | No description |
PROSITE profile | PS50888 | 17.263 | 351 | 400 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-16 | 353 | 410 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.6E-9 | 356 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-13 | 357 | 406 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
MDDFIDPFLS FPTWPDANTP ARSSWIGTAV SQTTSLLAGS MEAYGGDEKN QPVSVIPSSR 60 IIGDACMEEL NLLSHDSNSS MFLDGNIKYG IDKDIFPSGK LSMHKVHRQN SQPSFQDNVT 120 QESSFSLQGV IESNSTAETF GSELNPSCSV TLPHSTLTMS SSIESNGSEL SNFRQSLGDT 180 HSISSLPAMW PSSYTGVSSL MGQGRLQAFG FQGLESDNVM LRETSVENGK FAQLEDLPAA 240 SLHEHNELHN PNLPSFSAGQ QIKLTSGGLQ KQEQNGLHNL CLPSLASPPQ MSSTKTAGVQ 300 ICQQLPPSPQ GNTSKHHMNH TSSTQSQSAP ANAGGGCNGA VKPRVRARRG QATDPHSIAE 360 RLRREKIAER MKNLQELVPN SNKTDKASML DEIIDYVKFL QLQVKVLSMS RLGAAGAVVP 420 LLTDSQAEGS GSLLLSSSSS VGQGADLSES QDTLAFEQEV VKLMESNVTM AMQYLQNKGL 480 CLMPIALASA ISNQKGSSTC TIPPDRRKPD MNLGVICPSN QSFMERNGPE DGANGCNGPV 540 VKQEEA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010917385.1 | 0.0 | transcription factor bHLH78 | ||||
TrEMBL | A0A2H3YEK7 | 0.0 | A0A2H3YEK7_PHODC; transcription factor bHLH10-like | ||||
STRING | XP_008797366.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3254 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58010.1 | 3e-58 | LJRHL1-like 3 |