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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_010917292.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 271aa MW: 29893.4 Da PI: 10.1986 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_010917292.1 | genome | OG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 321.4 | 2.8e-98 | 1 | 271 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.rernlalsekkaavaerd..maflqrdkalaernkalverdnkllalllvensl 91
mdddg rn++yye+ lk nlglqlmss+a+r+a +n + +++ ++ e +++ rd ++++ r+nk++++++++ s
XP_010917292.1 1 MDDDGGLGmRNWAYYEQP--LKGNLGLQLMSSVADRNATKpLLSNGGFFHRDCSMPEPPapIEY-VRDGWISH-------RENKMVHMMPANSS- 84
999999888********9..****************9765355555555555555433355889.89999998.......9*********7775. PP
GAGA_bind 92 asalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader 186
++vl++++ ++ l + l+++ + k ++ p+ + + + ke++ kk r++ +k++k kk+kk ++++ ++++++ +r
XP_010917292.1 85 -------YSVLPDAHGAHALPM-----LQPPEPP-----KDDKIPMMDDPGSRKEAPLKK-RAQ---AKTPKPKKPKKVA-APRN-ETSNGSLSR 156
.......899********9999.....5555555.....346778888777777776665.444...5555566666633.3333.333333479 PP
GAGA_bind 187 skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsn 281
++ +ks+d+v+ng++lD+s++P+P+CsCtG+++qCY+WG GGWqSaCCtt+iS+yPLP+stkrrgaRiagrKmSqgafkk+LekLa+eGy+lsn
XP_010917292.1 157 GRNVRKSMDVVINGIDLDISGIPTPICSCTGTPQQCYRWGVGGWQSACCTTSISMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLSN 251
9********************************************************************************************** PP
GAGA_bind 282 pvDLkdhWAkHGtnkfvtir 301
p+DLk++WAkHGtnkfvtir
XP_010917292.1 252 PIDLKTYWAKHGTNKFVTIR 271
*******************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 271 aa
Download sequence Send
to blast |
MDDDGGLGMR NWAYYEQPLK GNLGLQLMSS VADRNATKPL LSNGGFFHRD CSMPEPPAPI 60
EYVRDGWISH RENKMVHMMP ANSSYSVLPD AHGAHALPML QPPEPPKDDK IPMMDDPGSR 120
KEAPLKKRAQ AKTPKPKKPK KVAAPRNETS NGSLSRGRNV RKSMDVVING IDLDISGIPT 180
PICSCTGTPQ QCYRWGVGGW QSACCTTSIS MYPLPMSTKR RGARIAGRKM SQGAFKKVLE 240
KLAGEGYNLS NPIDLKTYWA KHGTNKFVTI R
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
