PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010917172.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 269aa MW: 30839.1 Da PI: 7.9314 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.1 | 1.5e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l+ ++k G g+W++ +++ g++R++k+c++rw++yl XP_010917172.1 14 RGAWTAEEDRILKAYIKANGEGRWRSLPKKAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.5 | 9.5e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++ XP_010917172.1 67 RGNITCEEEDLIIRLHKLLGNK-WSLIAGRLP-GRTDNEIKNYWNTC 111 788899****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.693 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.41E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.9E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.78E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.601 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.87E-9 | 73 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MGRKPCCSKE DINRGAWTAE EDRILKAYIK ANGEGRWRSL PKKAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TCEEEDLIIR LHKLLGNKWS LIAGRLPGRT DNEIKNYWNT CLKKKVQGQH 120 QAKRSQPPVK EATELVRTKA IRCANMFIPP QQHVAQNQEK NVTIEPAMIG ELATEKVANS 180 RSDDHSPIDP REDTWWDVLV GLDKSNGSTS EARDLDFIQL WGSESPCSQY TRRDIFEDWM 240 SDAALPFEVE LKSLADFLNC EDEWLGGEL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-25 | 11 | 116 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010917172.1 | 0.0 | transcription repressor MYB6-like | ||||
TrEMBL | A0A2H3XNV6 | 1e-168 | A0A2H3XNV6_PHODC; transcription repressor MYB6 | ||||
STRING | XP_008786613.1 | 1e-169 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 4e-63 | myb domain protein 4 |