PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010917169.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

MYB

Protein Properties

Length: 272aa MW: 30889 Da PI: 8.4901

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010917169.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.5	2.3e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++lv ++k +G g+W+ + + g++R++k+c++rw++yl XP_010917169.1 14 KGAWTASEDQILVSYIKAHGEGNWRNLPIRAGLKRCGKSCRLRWLNYL 61 79********************************************97 PP
2	Myb_DNA-binding	51.2	2.9e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eE++l++ ++k+lG++ W++Ia +++ gRt++++k++w++ XP_010917169.1 67 RGNITEEEEKLIIILHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 7999****************.*****.**********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	7.7E-29	12	108	IPR009057	Homeodomain-like
SMART	SM00717	3.1E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	8.5E-15	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-23	15	68	IPR009057	Homeodomain-like
CDD	cd00167	6.06E-10	16	61	No hit	No description
PROSITE profile	PS51294	26.436	62	116	IPR017930	Myb domain
SMART	SM00717	4.6E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-14	67	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.9E-24	69	116	IPR009057	Homeodomain-like
CDD	cd00167	3.34E-11	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MGRKPCCIKE GLNKGAWTAS EDQILVSYIK AHGEGNWRNL PIRAGLKRCG KSCRLRWLNY 60 LRPNIKRGNI TEEEEKLIII LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLHKKVLGQP 120 TDQKSKSKHK QTKSMPEPPL TDPNATTSVT VVRTKARRCT KAFFLHDQCL PSPPNNQPHL 180 ELATKESQSF LDTPQSYHSL NGPLSDGFFH AMADGNQSGN STMQEGDSIS WTMSFDDALM 240 DWTGLDCFEP NFTSHLMSSD PFLDSEEWFP WT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-28	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010917169.1	0.0	transcription factor MYB8-like
TrEMBL	A0A2H3XP04	1e-170	A0A2H3XP04_PHODC; transcription repressor MYB5-like
STRING	XP_008786610.1	1e-171	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	2e-52	myb domain protein 3