PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010917059.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Dof

Protein Properties

Length: 457aa MW: 49847.4 Da PI: 6.8677

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010917059.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.6	3.1e-39	110	169	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s XP_010917059.1 110 PDKILPCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSS 169 7899******************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	108	167	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.8E-32	112	168	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.779	114	168	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	116	152	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MAEIRDLAIK LFGKTIPLQS TGESPPVSGG SEESSGKEEK DHKEETTPET KDQDIESPDS 60 EEKSDSPTSI AGETDKLSFG NQEDTNIKDS KSKEQSNGTS NSQEKAPKKP DKILPCPRCN 120 SLDTKFCYFN NYNVNQPRHF CKNCQRYWTA GGTMRNVPVG AGRRKNKSSI SHYRHITMDT 180 LQTVRSDAME AIHHPPINSN GTVLSFGSDT PLCESMASVL NLVEKNMKNC TRNGYHQMEE 240 QMVPLSCRAE NGDEHSSGSS AMASNSKHEA AKTGLQGVPA PIPYFNGTPW PYQWNPATPF 300 CTSSFAIPVY PATAYWGCAV PGSWGIPWLS PLASSPPNSG SPGSGPNSPT LGKHSRDGHI 360 LKGSNVEKED GFKQTNQETC IWVPKTLRID DADEAAKSSI WAMIGIKNDK ADAVSGRGIF 420 KAFQPKIDIK NHTSETSQLL HANPAALSRS LHFQESS

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MAEIRDLAIK LFGKTIPLQS TGESPPVSGG SEESSGKEEK DHKEETTPET KDQDIESPDS  60
EEKSDSPTSI AGETDKLSFG NQEDTNIKDS KSKEQSNGTS NSQEKAPKKP DKILPCPRCN  120
SLDTKFCYFN NYNVNQPRHF CKNCQRYWTA GGTMRNVPVG AGRRKNKSSI SHYRHITMDT  180
LQTVRSDAME AIHHPPINSN GTVLSFGSDT PLCESMASVL NLVEKNMKNC TRNGYHQMEE  240
QMVPLSCRAE NGDEHSSGSS AMASNSKHEA AKTGLQGVPA PIPYFNGTPW PYQWNPATPF  300
CTSSFAIPVY PATAYWGCAV PGSWGIPWLS PLASSPPNSG SPGSGPNSPT LGKHSRDGHI  360
LKGSNVEKED GFKQTNQETC IWVPKTLRID DADEAAKSSI WAMIGIKNDK ADAVSGRGIF  420
KAFQPKIDIK NHTSETSQLL HANPAALSRS LHFQESS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010917059.1	0.0	cyclic dof factor 2
TrEMBL	A0A2H3YYY8	0.0	A0A2H3YYY8_PHODC; cyclic dof factor 2
STRING	XP_008806017.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	5e-92	cycling DOF factor 2