PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

MYB

Protein Properties

Length: 306aa MW: 33544.8 Da PI: 7.2878

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010917042.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.3	7.1e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++++ g+ R+ k+c++rw +yl XP_010917042.1 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPAKTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	50.8	3.8e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++l++++ ++lG++ W++Ia++++ Rt++++k++w+++l XP_010917042.1 67 RGNFTDQEEKLIIHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.789	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.28E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-16	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.8E-24	15	68	IPR009057	Homeodomain-like
CDD	cd00167	1.69E-11	16	61	No hit	No description
PROSITE profile	PS51294	24.887	62	116	IPR017930	Myb domain
SMART	SM00717	2.5E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	3.8E-15	67	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.2E-25	69	117	IPR009057	Homeodomain-like
CDD	cd00167	3.72E-11	69	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MGRLPCCDKV GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PAKTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TDQEEKLIIH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLKKLE 120 TGADGLTTSG VSSHQSISKG QWERRLQTDI NTAKQALCEA LSLEKPNCLS SSKASSSGSN 180 SSTRLSTYAS STENISRLLE GWMRKSTRPG ACQANSGSTQ TDSACSQGTP SATNCILSLE 240 PPELLFGPDS STPEASETSL QGEERKLVWE AQEPLSLIES WLLDESVGQG QLSLLDMALD 300 DASGLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-26	14	116	4	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	5e-26	14	116	58	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	5e-26	14	116	58	159	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	3e-26	14	116	27	128	MYB TRANSFORMING PROTEIN
1mse_C	1e-26	14	116	4	105	C-Myb DNA-Binding Domain
1msf_C	1e-26	14	116	4	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010917042.1	0.0	myb-related protein 306
Swissprot	P81392	1e-111	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A2H3YPV3	0.0	A0A2H3YPV3_PHODC; myb-related protein 306-like
STRING	XP_008801687.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	4e-97	myb domain protein 94

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]