PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010917028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 250aa MW: 27540 Da PI: 6.1554 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.4 | 6.9e-05 | 37 | 85 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + + erE+ R+++N+ f eL +++ +a + + Ka+iL A + +++L XP_010917028.1 37 KIHKAEREKLKREQLNELFLELGRVVEPA----RQNNGKATILVDASRILRDL 85 567889**********************8....67788999999888877766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.47E-4 | 33 | 90 | No hit | No description |
SuperFamily | SSF47459 | 6.8E-11 | 34 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.931 | 35 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-7 | 36 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MISDHPSSMA KETNVAADKP VDGSLLNKKS QGRVPKKIHK AEREKLKREQ LNELFLELGR 60 VVEPARQNNG KATILVDASR ILRDLLAQVE SLRKENAALL TESSYVTAEK NELRDENAAL 120 QADIAELQSE LQVRMMSDSV WTNSTAMSPP TLPQPASTVL PLQQQPPDIR PVHGAPIREL 180 QLFPESTATQ TEPTPSSNVT RPHARYPTPS SFWPGQLLSS LPRTAQEEQY LSGTSSISTI 240 SSREEGSDKA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010917028.2 | 0.0 | transcription factor BHLH062 isoform X1 | ||||
Swissprot | Q69V10 | 7e-60 | BH062_ORYSJ; Transcription factor BHLH062 | ||||
TrEMBL | A0A2H3YSG2 | 1e-137 | A0A2H3YSG2_PHODC; transcription factor BHLH062-like | ||||
STRING | XP_008803182.1 | 1e-138 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2481 | 38 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 1e-42 | bHLH family protein |
Publications ? help Back to Top | |||
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