PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

GRAS

Protein Properties

Length: 594aa MW: 64659.1 Da PI: 5.349

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010916867.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	411.4	8.2e-126	182	557	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 lv+lL++cA+av+ gd la ++ +++ + ++g + ++a yf+ AL +r+++ + ++++++ ++ se ++ f+e++P+lkf XP_010916867.1 182 LVHLLMSCADAVQRGDSGLAGTITDEMRIAltRVNTGFGIGKVAGYFVDALCRRIYS--LSFSSSISVAGSA----SEYEILYHHFYEACPYLKF 270 68********************97765544899999***************..5555555555554....566677899****** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188 +h++aNqaIlea++g +rvH+iDf+++ GlQWpaL+qaLa R++gpp lR+Tg+g+p+++ +++l+e+g rLa++A++++v+f f+ ++a+rl+d XP_010916867.1 271 AHFMANQAILEAFDGYDRVHVIDFNLMDGLQWPALIQALALRSGGPPFLRLTGIGPPSPDGRDALREVGLRLAELARSVRVRFAFRGVAASRLDD 365 ******************************************************************************************* PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak.lpres.. 279 +++++L+v pgEa+aVn+vlqlhrll+++++ + ++d+vL + +l+P++v+vveqeadhn++ Fl+rf+eal yys++fdsle + ++++ XP_010916867.1 366 VRPWMLQVVPGEAVAVNSVLQLHRLLRDPGDDAAaPIDSVLGWMVGLRPNIVTVVEQEADHNKPAFLDRFTEALFYYSTMFDSLEGGrCAAQQlq 460 *************************9988879********************************************76633333355 PP GRAS 280 ..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372 ++ ++ + +l+rei+n+v+cega+r erhe l++Wr+rl++aG+k+v+l+++a kqa++ll ++++gy v+e +g+l+lgW++rpL+s+Sa XP_010916867.1 461 qqQQTTMAAELYLQREICNIVCCEGAARLERHEPLATWRARLGRAGLKAVHLGSNAFKQASMLLTLFSGEGYGVQEVDGCLTLGWHSRPLISASA 555 546677778889********************************************************************************* PP GRAS 373 Wr 374 Wr XP_010916867.1 556 WR 557 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01129	8.6E-17	66	137	No hit	No description
Pfam	PF12041	5.6E-25	66	130	IPR021914	Transcriptional factor DELLA, N-terminal
PROSITE profile	PS50985	60.796	156	537	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.8E-123	182	557	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 594 aa Download sequence Send to blast
MERRRRVSNI LSLLLAWPPP PPPPRSSLPT IWERAEMGPY PFGSGTAASG WTDAESSQQS 60 SASEIDGLLV GAGYRVRSSD LRHVAQSLER LESAIGGAPA DHLAAAEAVH YNPSDLTAWV 120 DSMLSELAPS RRPPGPLPAS PTAETWPDPT YFPLPPQPHQ MAVVAAGSRQ REEEEEDSAI 180 RLVHLLMSCA DAVQRGDSGL AGTITDEMRI ALTRVNTGFG IGKVAGYFVD ALCRRIYSLS 240 FSSSISVAGS ASEYEILYHH FYEACPYLKF AHFMANQAIL EAFDGYDRVH VIDFNLMDGL 300 QWPALIQALA LRSGGPPFLR LTGIGPPSPD GRDALREVGL RLAELARSVR VRFAFRGVAA 360 SRLDDVRPWM LQVVPGEAVA VNSVLQLHRL LRDPGDDAAA PIDSVLGWMV GLRPNIVTVV 420 EQEADHNKPA FLDRFTEALF YYSTMFDSLE GGRCAAQQLQ QQQQTTMAAE LYLQREICNI 480 VCCEGAARLE RHEPLATWRA RLGRAGLKAV HLGSNAFKQA SMLLTLFSGE GYGVQEVDGC 540 LTLGWHSRPL ISASAWRADD NVAPPPDNQL FSSSVTASVP ASTISSSDNN SINF

Sequence ? help Back to Top

Protein Sequence Length: 594 aa Download sequence Send to blast

MERRRRVSNI LSLLLAWPPP PPPPRSSLPT IWERAEMGPY PFGSGTAASG WTDAESSQQS  60
SASEIDGLLV GAGYRVRSSD LRHVAQSLER LESAIGGAPA DHLAAAEAVH YNPSDLTAWV  120
DSMLSELAPS RRPPGPLPAS PTAETWPDPT YFPLPPQPHQ MAVVAAGSRQ REEEEEDSAI  180
RLVHLLMSCA DAVQRGDSGL AGTITDEMRI ALTRVNTGFG IGKVAGYFVD ALCRRIYSLS  240
FSSSISVAGS ASEYEILYHH FYEACPYLKF AHFMANQAIL EAFDGYDRVH VIDFNLMDGL  300
QWPALIQALA LRSGGPPFLR LTGIGPPSPD GRDALREVGL RLAELARSVR VRFAFRGVAA  360
SRLDDVRPWM LQVVPGEAVA VNSVLQLHRL LRDPGDDAAA PIDSVLGWMV GLRPNIVTVV  420
EQEADHNKPA FLDRFTEALF YYSTMFDSLE GGRCAAQQLQ QQQQTTMAAE LYLQREICNI  480
VCCEGAARLE RHEPLATWRA RLGRAGLKAV HLGSNAFKQA SMLLTLFSGE GYGVQEVDGC  540
LTLGWHSRPL ISASAWRADD NVAPPPDNQL FSSSVTASVP ASTISSSDNN SINF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-53	168	556	8	378	Protein SCARECROW
5b3h_A	2e-53	168	556	7	377	Protein SCARECROW
5b3h_D	2e-53	168	556	7	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Transcription coactivator of the zinc finger transcription factors GAF1/IDD2 and ENY/IDD1 in regulation of gibberellin homeostasis and signaling (PubMed:25035403). No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Positively regulates XERICO expression. In contrast to RGA, it is less sensitive to GA. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269\|PubMed:11487693, ECO:0000269\|PubMed:11606551, ECO:0000269\|PubMed:11606552, ECO:0000269\|PubMed:14973286, ECO:0000269\|PubMed:15128937, ECO:0000269\|PubMed:16034591, ECO:0000269\|PubMed:17933900, ECO:0000269\|PubMed:25035403, ECO:0000269\|PubMed:9389651}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010916867.1	0.0	DELLA protein GAI
Swissprot	Q9LQT8	1e-155	GAI_ARATH; DELLA protein GAI
TrEMBL	A0A2H3X2I3	0.0	A0A2H3X2I3_PHODC; DELLA protein GAI-like
STRING	XP_008777332.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP998	38	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	1e-153	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gallego-Giraldo C, et al. Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis. Plant J., 2014. 79(6): p. 1020-1032 [PMID:24961590] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Marín-de la Rosa N, et al. Genome Wide Binding Site Analysis Reveals Transcriptional Coactivation of Cytokinin-Responsive Genes by DELLA Proteins. PLoS Genet., 2015. 11(7): p. e1005337 [PMID:26134422] Shi H,Wei Y,Wang Q,Reiter RJ,He C Melatonin mediates the stabilization of DELLA proteins to repress the floral transition in Arabidopsis. J. Pineal Res., 2016. 60(3): p. 373-9 [PMID:26887824] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Qu J,Kang SG,Hah C,Jang JC Molecular and cellular characterization of GA-Stimulated Transcripts GASA4 and GASA6 in Arabidopsis thaliana. Plant Sci., 2016. 246: p. 1-10 [PMID:26993231] Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Wang H, et al. The DELLA-CONSTANS Transcription Factor Cascade Integrates Gibberellic Acid and Photoperiod Signaling to Regulate Flowering. Plant Physiol., 2016. 172(1): p. 479-88 [PMID:27406167] Li W,Wang H,Yu D Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Mol Plant, 2016. 9(11): p. 1492-1503 [PMID:27592586] Liu B,De Storme N,Geelen D Gibberellin Induces Diploid Pollen Formation by Interfering with Meiotic Cytokinesis. Plant Physiol., 2017. 173(1): p. 338-353 [PMID:27621423] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917] Zentella R, et al. The Arabidopsis O-fucosyltransferase SPINDLY activates nuclear growth repressor DELLA. Nat. Chem. Biol., 2017. 13(5): p. 479-485 [PMID:28244988] Zhang Y, et al. GA-DELLA pathway is involved in regulation of nitrogen deficiency-induced anthocyanin accumulation. Plant Cell Rep., 2017. 36(4): p. 557-569 [PMID:28275852] Zhang L,Chen L,Yu D Transcription Factor WRKY75 Interacts with DELLA Proteins to Affect Flowering. Plant Physiol., 2018. 176(1): p. 790-803 [PMID:29133369] Nelson SK,Ariizumi T,Steber CM Biology in the Dry Seed: Transcriptome Changes Associated with Dry Seed Dormancy and Dormancy Loss in the Arabidopsis GA-Insensitive sleepy1-2 Mutant. Front Plant Sci, 2017. 8: p. 2158 [PMID:29312402] Liu B,De Storme N,Geelen D Cold-Induced Male Meiotic Restitution in Arabidopsis thaliana Is Not Mediated by GA-DELLA Signaling. Front Plant Sci, 2018. 9: p. 91 [PMID:29459879] Zhang Y, et al. DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6. Plant Cell Rep., 2018. 37(7): p. 981-992 [PMID:29574486] Felipo-Benavent A, et al. Regulation of xylem fiber differentiation by gibberellins through DELLA-KNAT1 interaction. Development, 2019. [PMID:30389856] Wright DA, et al. Recovery of YAC-end sequences through complementation of an Escherichia coli pyrF mutation. Nucleic Acids Res., 1997. 25(13): p. 2679-80 [PMID:9185581]