PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010916821.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 548aa    MW: 57840.3 Da    PI: 4.3346
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010916821.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS309.47.9e-951375191373
            GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdgd.........pmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl 83 
                     lv+lL+++Aea++  d++  la+ +L rl+el+sp+g          +m+Rlaayf+ AL+  l +s+ +  +  + s++++++ + ++laa++l
  XP_010916821.1 137 LVHLLMAAAEALAGPDMSreLARVILVRLKELVSPAGGsatgccggtNMERLAAYFADALQGLLDGSSASAGAGGRQSASHRDDqTGDVLAAFQL 231
                     68***********97766559***************977999999999******************8888777776665555554999******* PP

            GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                     ++++sP+ kf+h+taNqaIleav+ ++rvHi+D+di +G+QW++L+qaL s++   +pp+lRiT+v +   + +++++etg+rLa fA++lg pf
  XP_010916821.1 232 LQDMSPYAKFGHFTANQAILEAVADDRRVHIVDYDIAEGVQWASLMQALVSQKdgPPPPHLRITAVTQ-GGSGTRAVQETGRRLAAFAASLGQPF 325
                     **************************************************888433356********9.434899******************** PP

            GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqe.adhnsesFlerflealeyysalfd 269
                     +f     ++ e +++   +v +gEa++Vn+vlql    ++ ++       ++L+   +l ++vv vve+e ++ + ++F+ rf++ l+ ysa+ d
  XP_010916821.1 326 SFGQCRLDTDERFRPAGVKVVKGEAVVVNCVLQLPPHAARATTRGAeSVASFLSGAATLGARVVAVVEEEgVEEEXGDFVGRFMDELHRYSAVWD 420
                     ****99999*************************8776655554444799********************556699******************* PP

            GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWk 363
                     slea++p +  +r  vEr++lg+ i  +v  + ++     +  + W e+++++GF+ v +s ++ +qa+lll  ++ dgyrvee+  + lvlgWk
  XP_010916821.1 421 SLEAGFPMQGWARGLVERVILGPMIAGAVRRAYRA-----TGEGGWGEWMGRMGFGRVGISCFNHCQARLLLGLFN-DGYRVEEDgLNKLVLGWK 509
                     ***************************99877776.....899*********************************.******99669999**** PP

            GRAS 364 drpLvsvSaW 373
                     +r+L+s+S W
  XP_010916821.1 510 SRRLTSASIW 519
                     ********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.318111500IPR005202Transcription factor GRAS
PfamPF035142.7E-92137519IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MAAPEEGMET DAGVGDCSWR ASVAMEEAGD LEISGVSSNS TINDDNGCAW TDWSPVIDWG  60
PLSGADDDFR GLIESMMCGD NDDDFPGAGV TCMAYDPYWN SNPSSTSTST GTGTPPAEEP  120
SSSYGAGGDN DDKGLRLVHL LMAAAEALAG PDMSRELARV ILVRLKELVS PAGGSATGCC  180
GGTNMERLAA YFADALQGLL DGSSASAGAG GRQSASHRDD QTGDVLAAFQ LLQDMSPYAK  240
FGHFTANQAI LEAVADDRRV HIVDYDIAEG VQWASLMQAL VSQKDGPPPP HLRITAVTQG  300
GSGTRAVQET GRRLAAFAAS LGQPFSFGQC RLDTDERFRP AGVKVVKGEA VVVNCVLQLP  360
PHAARATTRG AESVASFLSG AATLGARVVA VVEEEGVEEE XGDFVGRFMD ELHRYSAVWD  420
SLEAGFPMQG WARGLVERVI LGPMIAGAVR RAYRATGEGG WGEWMGRMGF GRVGISCFNH  480
CQARLLLGLF NDGYRVEEDG LNKLVLGWKS RRLTSASIWS PPPPPTPTAV PPASGVSNGM  540
EDSDFLLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-4812952110379Protein SCARECROW
5b3h_D2e-4812952110379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010916821.10.0LOW QUALITY PROTEIN: nodulation-signaling pathway 2 protein-like
SwissprotQ5NE241e-169NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2H3Z4A60.0A0A2H3Z4A6_PHODC; LOW QUALITY PROTEIN: nodulation-signaling pathway 2 protein-like
STRINGXP_008808173.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75803148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-100GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]