PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010916734.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WRKY
Protein Properties Length: 276aa    MW: 29681.1 Da    PI: 5.4555
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010916734.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.81.3e-2980138259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D ++WrKYGqK++kgs++pr+YYrC+s  gCp++k+vers+ dp+++++tY+ +Hnh+
  XP_010916734.1  80 TDSWAWRKYGQKPIKGSPYPRGYYRCSSLkGCPARKQVERSRVDPTMLVVTYSFDHNHP 138
                     69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081130.96374140IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.4E-3176140IPR003657WRKY domain
SuperFamilySSF1182901.44E-2578140IPR003657WRKY domain
SMARTSM007743.6E-3579139IPR003657WRKY domain
PfamPF031062.1E-2581138IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDGQCSTESR NSETEEVGIA PENNAPSPPG DPKAAQPLSP SAKRSRRSVQ KRVVSIPISG  60
DGDGSRPKGG AGAGEGAPPT DSWAWRKYGQ KPIKGSPYPR GYYRCSSLKG CPARKQVERS  120
RVDPTMLVVT YSFDHNHPWP LPKNHRHPKP WPPVAQPVEE PSPIRSSPPE SVVLDEKFSN  180
LIGEEPSLMI YDEIRWFSDV GSPSSTSPLA AAENLLFGSI FASAAVGLPE ECGGEDMVDG  240
EEDGTFAGLG ELPECAVVFR RERSRLAPAS WCGSTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-1951140679Disease resistance protein RRS1
5w3x_D1e-1951140679Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010916734.10.0probable WRKY transcription factor 65
SwissprotQ9LP562e-56WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A2H3X3S81e-155A0A2H3X3S8_PHODC; probable WRKY transcription factor 65
STRINGXP_008777869.11e-156(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70883651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.12e-44WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]