PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010916730.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 508aa    MW: 56139.8 Da    PI: 6.9424
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010916730.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.43.9e-11328372554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h + ErrRR+++N++f+ Lr llP+       K +Ka++L  + +Y++ L
  XP_010916730.1 328 HMISERRRREKLNESFHALRMLLPPG-----SKKDKASVLANTKDYVNTL 372
                     8899********************95.....599************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.269323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.68E-12323377No hitNo description
SuperFamilySSF474593.66E-16324392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-15326391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-9328372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MDSVFLLGAE ARGCFLQSAA RILGCSYICL WTPLPHQSNH LASIGGWHHE DDSSHPSSSS  60
GSLSRRLFEA YRNSAFSMDS GCVPGLAYKG RIPYIELGES ELMNSAATQI QRRFYQEAGI  120
KTAVFMGCSS GEIELGMTMS NIGQIYTQMN IQQVFSEDFV QHSLLRDPFP APDQSKPSES  180
SSSLRSLSVG SPECSSLLLT KTSVPFMPEV TGEQALVVPP HQIAMQAYGR YRDVQLPTPA  240
SDDAAITRAM LAILSSASSS SSPLLYQNRP VGPFRPYNPA LAPNLEPRAA AHGQKMVKTA  300
ISMLRGIYHM RYQTRMQELR PTSNQLHHMI SERRRREKLN ESFHALRMLL PPGSKKDKAS  360
VLANTKDYVN TLKAQISELE ERNRMLELQL QPAVEITEVG DSTETVEVQI TRASESTSQT  420
QRINLRITVR VECDMIDLVL RILKCLKEMG NISLVSVDAS TGPPQTNTFA SSNFTLQVQA  480
SDWDEETFKE AVTRVVDGLV ARPATTTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331336ERRRRE
2332337RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019704669.20.0putative transcription factor bHLH041
TrEMBLA0A2H3ZKU90.0A0A2H3ZKU9_PHODC; putative transcription factor bHLH041
STRINGXP_008782582.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.15e-39bHLH family protein